CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORT9 (Phosphoglycerate kinase OS=Borrelia turicatae (strain 91E135) GN=pgk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP D V+A +F  D   + V +  IP+  +G+DIG  +++   E L + KTVIWNGP+GVFEF+ F+
Sbjct:  258 VKVILPLDHVVASEFREDSIPEYVDSVDIPNDKVGMDIGEKTLRKIEEVLVSAKTVIWNGPLGVFEFNSFS 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_TREPS (Phosphoglycerate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=pgk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+++LP D V A  F AD     V    IP   MG+D+GP +++ +   L    +V+WNGP+GVFEFD FA
Sbjct:  281 GVSVVLPVDHVCASTFCADAQPVAVDDVHIPMHLMGMDVGPRTLEQYRAHLKGVSSVLWNGPVGVFEFDAFA 352          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_TREPA (Phosphoglycerate kinase OS=Treponema pallidum GN=pgk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+++LP D V A  F AD     V    IP   MG+D+GP +++ +   L    +V+WNGP+GVFEFD FA
Sbjct:  281 GVSVVLPVDHVCASTFCADAQPVAVDDVHIPMHLMGMDVGPRTLEQYRAHLKGVSSVLWNGPVGVFEFDAFA 352          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_RHOBA (Phosphoglycerate kinase OS=Rhodopirellula baltica GN=pgk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFA--ADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFE 247
            G  L LP D    D F   A  N KVV A  IPD   GLDIGP + K + E + + KT++WNGPMGVFE
Sbjct:  259 GDKLQLPVDTHCGDDFGNIAGCNKKVVAAGEIPDDMEGLDIGPETAKKYAEVIKSAKTIVWNGPMGVFE 327          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_EUPCR (Phosphoglycerate kinase OS=Euplotes crassus GN=PGK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPN-SKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + +PSD V A+ FA D   +  +      DGW+GLDIG  ++++F+E +  + T+ WNGP GVFE+  FA
Sbjct:  276 GVKIHIPSDFVCAESFAEDAKFAYKLKMKESQDGWLGLDIGDKTIRSFDEVIRRSNTLFWNGPSGVFEWKNFA 348          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_AZOVD (Phosphoglycerate kinase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=pgk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A  FA    + V     + D  M LDIGP +   F E L +++T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKAFAESAEATVKAIDEVADDDMILDIGPQTAAQFAELLKSSRTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_STRGC (Phosphoglycerate kinase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            L+LP D   A+ FA     K     A+  G++GLDIGP S+  F+EAL   KTV+WNGPMGVFE   F
Sbjct:  265 LILPVDSKEANAFADYTEVKDTEGEAVDPGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDF 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SHEDO (Phosphoglycerate kinase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            G ++ +P+DVV+A +F+    +K+V  + + D  M  DIGP S +   + ++T  T++WNGP+GVFEFD+F
Sbjct:  253 GGDIPVPTDVVVASEFSPTAAAKLVDVSQVSDTDMIFDIGPDSAEALAKIIETAGTIVWNGPVGVFEFDQF 323          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEFS (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA    + V     + D  M LDIGP +   F E L  ++T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAESAEATVKLIADVADDDMILDIGPQTAANFAELLKASQTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ACHLI (Phosphoglycerate kinase OS=Acholeplasma laidlawii (strain PG-8A) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 2
Query:   71 DVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            DVV    F  D  + V    AIP   MGLDIGP +V  F E + + KTV+WNGP GVFE +KFA
Sbjct:  269 DVVTGKAFDKDTETNVRSFDAIPADEMGLDIGPKTVARFKEIIASAKTVVWNGPQGVFEMEKFA 332          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_BORT92.607e-1143.66Phosphoglycerate kinase OS=Borrelia turicatae (str... [more]
PGK_TREPS3.404e-1144.44Phosphoglycerate kinase OS=Treponema pallidum subs... [more]
PGK_TREPA3.404e-1144.44Phosphoglycerate kinase OS=Treponema pallidum GN=p... [more]
PGK_RHOBA3.404e-1150.72Phosphoglycerate kinase OS=Rhodopirellula baltica ... [more]
PGK_EUPCR3.404e-1142.47Phosphoglycerate kinase OS=Euplotes crassus GN=PGK... [more]
PGK_AZOVD3.404e-1145.71Phosphoglycerate kinase OS=Azotobacter vinelandii ... [more]
PGK_STRGC4.446e-1150.00Phosphoglycerate kinase OS=Streptococcus gordonii ... [more]
PGK_SHEDO4.446e-1140.85Phosphoglycerate kinase OS=Shewanella denitrifican... [more]
PGK_PSEFS4.446e-1145.71Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_ACHLI4.446e-1151.56Phosphoglycerate kinase OS=Acholeplasma laidlawii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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