CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEPK (Phosphoglycerate kinase OS=Pseudomonas putida (strain KT2440) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA    + V     +    M LDIGP +   F E L ++KT++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAESAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEPF (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFA--ADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA  A+   K++   A  D  M LDIGP +   F E L ++KT++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAESAEATVKLIADVAADD--MILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEF5 (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA    + V     + D  M LDIGP +   F E L +++T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAESAAATVKLIADVADDDMILDIGPQTAAQFAELLKSSRTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSE14 (Phosphoglycerate kinase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP+DVV+A +FA    + V     + D  M LDIGP +   F E L ++ T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPTDVVVAKEFAESATATVKLIADVADDDMILDIGPQTAAHFAELLKSSGTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DROME (Phosphoglycerate kinase OS=Drosophila melanogaster GN=Pgk PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATA---IPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V L LP D V  DKFA   N+ V  AT    IPDG MGLD+GP + + F   +   K ++WNGP GVFEF  FA
Sbjct:  276 VQLHLPVDFVCGDKFAE--NAAVSEATVEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFA 347          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEPG (Phosphoglycerate kinase OS=Pseudomonas putida (strain GB-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA    + V     +    M LDIGP +   F E L ++KT++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEP1 (Phosphoglycerate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A +FA    + V     +    M LDIGP +   F E L ++KT++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NEIMF (Phosphoglycerate kinase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G ++ LP+DVV+A  F AD  + V     + +  M LDIGP S     + L    TV+WNGP+GVFEFD+FA
Sbjct:  254 GGSVPLPTDVVVAKAFTADAEAVVKDIADVAEDDMILDIGPKSAAELADLLKAAGTVVWNGPVGVFEFDQFA 325          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ELUMP (Phosphoglycerate kinase OS=Elusimicrobium minutum (strain Pei191) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            GV +LLP D V + +F+ +          IP+G MGLDIGP ++  F++ L   KT+ WNGP+GVFE   F
Sbjct:  260 GVEILLPVDHVCSTEFSNESPVMTTENANIPEGQMGLDIGPKTIALFDKKLLECKTIFWNGPVGVFEMSNF 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DIAST (Phosphoglycerate kinase OS=Diaphorobacter sp. (strain TPSY) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  + +P+DVV+A  FAAD  + V  A+ + +  + LDIGP +       L    T++WNGP+GVFEFD+FA
Sbjct:  258 GAEVPIPTDVVVAKAFAADAPATVKKASEVAEDDLILDIGPETAAKLAAQLKAAGTIVWNGPVGVFEFDQFA 329          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_PSEPK5.807e-1145.71Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEPF5.807e-1148.61Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PSEF55.807e-1145.71Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PSE145.807e-1145.71Phosphoglycerate kinase OS=Pseudomonas syringae pv... [more]
PGK_DROME5.807e-1150.00Phosphoglycerate kinase OS=Drosophila melanogaster... [more]
PGK_PSEPG7.584e-1145.71Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEP17.584e-1145.71Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_NEIMF7.584e-1145.83Phosphoglycerate kinase OS=Neisseria meningitidis ... [more]
PGK_ELUMP7.584e-1143.66Phosphoglycerate kinase OS=Elusimicrobium minutum ... [more]
PGK_DIAST7.584e-1143.06Phosphoglycerate kinase OS=Diaphorobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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