CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10996 contig Csv1_Contig10996:19..280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORPA (Phosphoglycerate kinase OS=Bordetella parapertussis GN=pgk PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  + +P+DVV A  F AD  + V  A  + +  M LDIGP + +   + L    T++WNGP+GVFEFD+FA
Sbjct:  259 GAEVPIPTDVVCAKSFGADAAATVKAAADVAEDDMILDIGPQTAQRLADILKAAGTIVWNGPVGVFEFDQFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORBR (Phosphoglycerate kinase OS=Bordetella bronchiseptica GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  + +P+DVV A  F AD  + V  A  + +  M LDIGP + +   + L    T++WNGP+GVFEFD+FA
Sbjct:  259 GAEVPIPTDVVCAKSFGADAAATVKAAADVAEDDMILDIGPQTAQRLADILKAAGTIVWNGPVGVFEFDQFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ACISJ (Phosphoglycerate kinase OS=Acidovorax sp. (strain JS42) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  + +P+DVV+A  FAAD  + V  A+ + +  + LDIGP +       L    T++WNGP+GVFEFD+FA
Sbjct:  258 GAEVPIPTDVVVAKAFAADAPATVKKASEVAEDDLILDIGPETAAQLAAQLKAAGTIVWNGPVGVFEFDQFA 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKC_LEIME (Phosphoglycerate kinase, glycosomal OS=Leishmania mexicana GN=PGKC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFE 247
            GV +LLP D V   +F A  +  V     +PDG+M LDIGP ++  + E +   K+ IWNGPMGVFE
Sbjct:  276 GVQVLLPVDHVCNKEFKAVDSPLVTEDVDVPDGYMALDIGPKTIHMYEEVIGRCKSAIWNGPMGVFE 342          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKB_LEIME (Phosphoglycerate kinase, cytosolic OS=Leishmania mexicana GN=PGKB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFE 247
            GV +LLP D V   +F A  +  V     +PDG+M LDIGP ++  + E +   K+ IWNGPMGVFE
Sbjct:  276 GVQVLLPVDHVCNKEFKAVDSPLVTEDVDVPDGYMALDIGPKTIHMYEEVIGRCKSAIWNGPMGVFE 342          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_STACT (Phosphoglycerate kinase OS=Staphylococcus carnosus (strain TM300) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP D  +A +F+ +    VV    IP     LDIGP +V+ F + L    TV+WNGPMGVFEF+ FA
Sbjct:  259 GDKIVLPVDAKVAREFSNEAQFTVVTIDQIPADQEALDIGPKTVELFEKELKGAHTVVWNGPMGVFEFENFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEU2 (Phosphoglycerate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP+DVV+A +FA    + V     + D  M LDIGP +   F E L ++ T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPTDVVVAKEFAESAAATVKLIADVADDDMILDIGPQTAAHFAELLKSSGTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MARAV (Phosphoglycerate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V + LP DVV+A +FA    +     + + D  M LD+GP +   F E L   KT++WNGP+GVFEFD+F
Sbjct:  249 VEIPLPVDVVVASEFAETATATTKNISDVSDDDMILDVGPETAGQFAELLKNAKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_HALHL (Phosphoglycerate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  + +P DVV A  F+AD  + V P  A+PD  M LD+GP +   ++  L    TV+WNGP+GVFE   FA
Sbjct:  253 GGEIPIPEDVVTARDFSADAEAHVHPVDAVPDDEMILDVGPQTRARYDGMLRNAGTVVWNGPVGVFEMAPFA 324          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOB8 (Phosphoglycerate kinase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pgk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            GV  LLP D  +A +F  D  + +     IP G MGLDIGP +   + +A+   KTVIWNGPMGVFEF+ +
Sbjct:  257 GVKFLLPVDHRVAAEFK-DVEATITEDQNIPVGNMGLDIGPKTETLYADAIKDAKTVIWNGPMGVFEFENY 326          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_BORPA7.584e-1143.06Phosphoglycerate kinase OS=Bordetella parapertussi... [more]
PGK_BORBR7.584e-1143.06Phosphoglycerate kinase OS=Bordetella bronchisepti... [more]
PGK_ACISJ7.584e-1143.06Phosphoglycerate kinase OS=Acidovorax sp. (strain ... [more]
PGKC_LEIME7.584e-1146.27Phosphoglycerate kinase, glycosomal OS=Leishmania ... [more]
PGKB_LEIME7.584e-1146.27Phosphoglycerate kinase, cytosolic OS=Leishmania m... [more]
PGK_STACT9.905e-1144.44Phosphoglycerate kinase OS=Staphylococcus carnosus... [more]
PGK_PSEU29.905e-1145.71Phosphoglycerate kinase OS=Pseudomonas syringae pv... [more]
PGK_MARAV9.905e-1144.29Phosphoglycerate kinase OS=Marinobacter aquaeolei ... [more]
PGK_HALHL9.905e-1144.44Phosphoglycerate kinase OS=Halorhodospira halophil... [more]
PGK_CLOB89.905e-1147.89Phosphoglycerate kinase OS=Clostridium beijerincki... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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