CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            +P DVVIAD F+AD  SK+V    IPDGWMGLDIGP SV+ F   L + KTV WNGPMGVFEF+KFA
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  LLP+DVV+AD F+ D NSK+    AI +GWMGLDIG  SV+ F  AL   KTVIWNGPMGVFEF+KFA
Sbjct:  262 GVEFLLPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  LLP+DVV+AD F+ D NSK+    AI +GWMGLDIG  SV+ F  AL   KTVIWNGPMGVFEF+KFA
Sbjct:  262 GVEFLLPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DEIGD (Phosphoglycerate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP+D V AD+FA D  ++VVPA  IPDGWMGLDIGP + + + EAL   KTV WNGPMGVFEF  FA
Sbjct:  253 GDRLMLPTDAVAADRFAPDAQTRVVPADRIPDGWMGLDIGPETARAYAEALQGAKTVFWNGPMGVFEFPAFA 324          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NAUPA (Phosphoglycerate kinase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.379e-20
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   LP D+VIADKFA D   K V A  IPDGWMGLDIGP SV+ F E L   +T++WNGPMGVFE DKF+
Sbjct:  262 GVKFYLPVDIVIADKFAEDAMVKYVTAQEIPDGWMGLDIGPASVRLFGEVLWDAQTILWNGPMGVFEMDKFS 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.379e-20
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP+D V AD+FAAD +++VVPA  IP+GWMGLDIGP + + + EAL   KTV WNGPMGVFEF  FA
Sbjct:  253 GDKLMLPTDAVAADRFAADADTRVVPADQIPEGWMGLDIGPDTQQAYTEALRGAKTVFWNGPMGVFEFPAFA 324          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_RHOE4 (Phosphoglycerate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.801e-20
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            +P DVV+AD F+AD  SK+VP   IPDGWMGLDIGP SVK F   L   KTV WNGPMGVFEF KF
Sbjct:  269 IPQDVVVADSFSADAESKIVPFDKIPDGWMGLDIGPESVKRFAAILTGAKTVFWNGPMGVFEFPKF 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+A++F+ D  SK+    +I   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLANEFSPDAESKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.072e-20
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            LP DVV+AD F+AD  SK VPA  IPDGWMGLDIG  SV  F   L   KTV WNGPMGVFEF+KFA
Sbjct:  270 LPRDVVVADSFSADAESKCVPANEIPDGWMGLDIGAESVDRFAALLTEAKTVFWNGPMGVFEFEKFA 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM5 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=pgk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.012e-20
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLPSDVV+A++F+    SKV    +I   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPSDVVLANEFSPTAESKVSQIDSISGDWMGLDIGPQSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_RHOOB8.084e-2167.16Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_PROMT8.084e-2165.28Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM18.084e-2165.28Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_DEIGD8.084e-2162.50Phosphoglycerate kinase OS=Deinococcus geothermali... [more]
PGK_NAUPA1.379e-2063.89Phosphoglycerate kinase OS=Nautilia profundicola (... [more]
PGK_DEIDV1.379e-2062.50Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_RHOE41.801e-2068.18Phosphoglycerate kinase OS=Rhodococcus erythropoli... [more]
PGK_PROM02.352e-2062.50Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_NOCFA3.072e-2068.66Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_PROM54.012e-2063.89Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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