CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.012e-20
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LL+P DVV+AD+FAAD   +VV   AIP+GWM LDIGP +V+ ++  +  +KTV+WNGPMGVFE D FA
Sbjct:  257 GVQLLMPVDVVVADRFAADAEKQVVAIDAIPEGWMALDIGPKTVEQYHSVIVDSKTVVWNGPMGVFEMDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ROSCS (Phosphoglycerate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pgk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV L+LP+DVVIAD F+AD N KVVP   IP GW  LDIGP +++ + E +   +TVIWNGPMGVFE   FA
Sbjct:  259 GVRLMLPTDVVIADAFSADANRKVVPVGEIPPGWRALDIGPETIRAYTEVITGAQTVIWNGPMGVFELAPFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.601e-19
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  LLP+DVV+ADKF  D N+K+    +I D WMGLDIGP +   F E +   KTVIWNGPMGVFE +KFA
Sbjct:  258 GVKFLLPTDVVLADKFDQDANTKIATIDSIEDDWMGLDIGPETANCFREEVVNAKTVIWNGPMGVFEMEKFA 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_FRASN (Phosphoglycerate kinase OS=Frankia sp. (strain EAN1pec) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.793e-19
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP+DVV+AD+FAAD  + VV A AIPDGW+GLDIGP S   F   +    T+ WNGPMGVFEF  FA
Sbjct:  264 GDRLVLPTDVVVADRFAADAETAVVAADAIPDGWLGLDIGPASTAAFARVVAGAATIFWNGPMGVFEFAPFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_HERA2 (Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.882e-19
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLPSDVV+AD F+A+ N++V+    +PDGW  LDIGP + +T+++ +   KTVIWNGPMGVFE + FA
Sbjct:  258 GVKLLLPSDVVVADAFSAEANTQVLSIDDVPDGWRILDIGPETRQTYSQVVSEAKTVIWNGPMGVFELEPFA 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORJK (Phosphoglycerate kinase OS=Corynebacterium jeikeium (strain K411) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.882e-19
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            + LP+DVV+A++F  D + + V   +IP+GWMGLDIGP SVK F E L  +KTV WNGPMGVFEF  FA
Sbjct:  267 IALPTDVVVAERFDKDADHRTVDLNSIPEGWMGLDIGPESVKAFAEVLSKSKTVFWNGPMGVFEFPAFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_GEOSF (Phosphoglycerate kinase OS=Geobacter sp. (strain FRC-32) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.291e-18
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G+  LLP D V+AD+FAAD + K V    IP  WM LD+GP S   F++AL    TVIWNGPMGVFE D+FA
Sbjct:  260 GIEFLLPEDCVVADRFAADADCKTVSVNDIPSEWMALDVGPASTARFSDALKEANTVIWNGPMGVFEMDRFA 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SULDN (Phosphoglycerate kinase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   LP DVV+ADKF+ D  SK+V    IP  WMGLDIGP +V+ + E L   +TV+WNGPMGV+E DKFA
Sbjct:  261 GVKFYLPVDVVVADKFSEDAISKIVSYQEIPPLWMGLDIGPATVRLYGEVLSDVQTVLWNGPMGVYEMDKFA 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SACEN (Phosphoglycerate kinase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP DVV+AD+FAAD  S+VV A AIP  WMGLDIGP SV+ F   L  ++TV WNGP GVFEF  FA
Sbjct:  262 GDKLVLPVDVVVADRFAADAESRVVDADAIPADWMGLDIGPRSVELFAGILAGSRTVFWNGPAGVFEFPAFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP D VIADKFA D  SK V A   +PDG MGLD+GP S K F  A+   KT++WNGP GVFEFDKFA
Sbjct:  276 GVQIHLPVDFVIADKFAEDATSKTVTAEEGVPDGHMGLDVGPESSKIFAAAIQRAKTIVWNGPAGVFEFDKFA 348          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_BREBN4.012e-2059.72Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_ROSCS1.525e-1959.72Phosphoglycerate kinase OS=Roseiflexus castenholzi... [more]
PGK_CHLT32.601e-1959.72Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_FRASN5.793e-1959.72Phosphoglycerate kinase OS=Frankia sp. (strain EAN... [more]
PGK_HERA29.882e-1956.94Phosphoglycerate kinase OS=Herpetosiphon aurantiac... [more]
PGK_CORJK9.882e-1959.42Phosphoglycerate kinase OS=Corynebacterium jeikeiu... [more]
PGK_GEOSF1.291e-1856.94Phosphoglycerate kinase OS=Geobacter sp. (strain F... [more]
PGK_SULDN1.686e-1858.33Phosphoglycerate kinase OS=Sulfurimonas denitrific... [more]
PGK_SACEN1.686e-1862.50Phosphoglycerate kinase OS=Saccharopolyspora eryth... [more]
PGK_CAEEL1.686e-1861.64Probable phosphoglycerate kinase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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