CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_FRAAA (Phosphoglycerate kinase OS=Frankia alni (strain ACN14a) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.201e-18
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP+DVV+AD+FAAD  + VVPA  I DGW+GLDIGP S   F   LD   TV WNGPMGVFE   FA
Sbjct:  264 GDRIVLPTDVVVADRFAADAQTAVVPADGIGDGWLGLDIGPASTALFAGRLDGAATVFWNGPMGVFELAPFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DESPS (Phosphoglycerate kinase OS=Desulfotalea psychrophila GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.201e-18
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G+ + LP D V+AD+FAAD   K VPA ++P+GWM LD+GP S   F EAL    T++WNGPMG FE D FA
Sbjct:  257 GMKVYLPVDFVVADRFAADAVHKTVPADSVPEGWMALDVGPASSILFREALQGAGTIVWNGPMGAFEMDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMC1 (Phosphoglycerate kinase OS=Campylobacter concisus (strain 13826) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.201e-18
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A  F+A+   K VPA  IP+GWMGLDIGP S++ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  262 GVKIYLPVDVVAAQTFSAESAVKYVPAQEIPNGWMGLDIGPASIRLFKEVIADAQTIWWNGPMGVFEMDKFS 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.755e-18
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  +LLP+D+V+A +F AD   KVVP  AIP+GWM LDIGP + + F + +    TV+WNGPMGVFE + FA
Sbjct:  255 GDKILLPTDLVVASEFKADAEQKVVPVDAIPEGWMALDIGPETARAFADVIRGAHTVVWNGPMGVFEMEPFA 326          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.755e-18
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  +LP+DVVIAD F+AD N +VV    IP GW  LDIGP +V+ + E + T +TVIWNGPMGVFE   FA
Sbjct:  259 GVRFMLPTDVVIADAFSADANRRVVSVGDIPPGWRVLDIGPETVRAYTEIITTAQTVIWNGPMGVFELAPFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.755e-18
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV +LLP D+V+A +F AD   +VV   A+PDGWM LDIGP + + +  AL+  +TV+WNGPMGVFE + FA
Sbjct:  257 GVKMLLPRDLVVAQEFKADAPHQVVAVNAVPDGWMALDIGPETARAYAGALEGARTVVWNGPMGVFEMEAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCS2 (Phosphoglycerate kinase OS=Mycobacterium smegmatis GN=pgk PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.904e-18
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            LP D+V+ADKFAAD  ++ V A  IPDG MGLDIGP SV+ F   L   KTV WNGPMGVFEF  FA
Sbjct:  274 LPVDIVVADKFAADAEAETVAADRIPDGKMGLDIGPGSVERFTALLSNAKTVFWNGPMGVFEFPAFA 340          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCA9 (Phosphoglycerate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            LP D+V AD+FAAD  S++V A AIPD  MGLDIGP SVK F   L   KT+ WNGPMGVFEF  FA
Sbjct:  278 LPMDIVAADEFAADSPSEIVAADAIPDSKMGLDIGPESVKRFAAVLSNAKTIFWNGPMGVFEFPAFA 344          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_GEOSM (Phosphoglycerate kinase OS=Geobacter sp. (strain M21) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   LP D V+AD+F     +KV P   IP+GWM LD+GP +V  F EAL   KT++WNGPMGVFE D F+
Sbjct:  260 GVKFYLPVDCVVADQFNPAAETKVCPIQEIPEGWMALDVGPATVTLFTEALQNAKTIVWNGPMGVFEMDAFS 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_GEOBB (Phosphoglycerate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   LP D V+AD+F     +KV P   IP+GWM LD+GP +V  F EAL   KT++WNGPMGVFE D F+
Sbjct:  260 GVKFYLPVDCVVADQFNPAAETKVCPIQEIPEGWMALDVGPATVTLFTEALQNAKTIVWNGPMGVFEMDAFS 331          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_FRAAA2.201e-1859.72Phosphoglycerate kinase OS=Frankia alni (strain AC... [more]
PGK_DESPS2.201e-1855.56Phosphoglycerate kinase OS=Desulfotalea psychrophi... [more]
PGK_CAMC12.201e-1856.94Phosphoglycerate kinase OS=Campylobacter concisus ... [more]
PGK_SYMTH3.755e-1854.17Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_ROSS13.755e-1858.33Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_MOOTA3.755e-1854.17Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_MYCS24.904e-1864.18Phosphoglycerate kinase OS=Mycobacterium smegmatis... [more]
PGK_MYCA96.405e-1864.18Phosphoglycerate kinase OS=Mycobacterium abscessus... [more]
PGK_GEOSM8.366e-1854.17Phosphoglycerate kinase OS=Geobacter sp. (strain M... [more]
PGK_GEOBB8.366e-1854.17Phosphoglycerate kinase OS=Geobacter bemidjiensis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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