CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCPA (Phosphoglycerate kinase OS=Mycobacterium paratuberculosis GN=pgk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP D+V AD+FAAD   + VPA AIPD  MGLDIGP SVK F   L   +T+ WNGPMGVFEF  FA
Sbjct:  271 LRLPVDIVAADRFAADAAPQTVPADAIPDDLMGLDIGPGSVKRFTALLSNAETIFWNGPMGVFEFPAFA 339          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCA1 (Phosphoglycerate kinase OS=Mycobacterium avium (strain 104) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP D+V AD+FAAD   + VPA AIPD  MGLDIGP SVK F   L   +T+ WNGPMGVFEF  FA
Sbjct:  271 LRLPVDIVAADRFAADAAPQTVPADAIPDDLMGLDIGPGSVKRFTALLSNAETIFWNGPMGVFEFPAFA 339          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_FRASC (Phosphoglycerate kinase OS=Frankia sp. (strain CcI3) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP+DVV+AD+FAAD ++ VV A AIP GW+GLDIGP S + F   L    TV WNGPMGVFE   FA
Sbjct:  264 GERIVLPTDVVVADRFAADADTAVVAADAIPAGWLGLDIGPASTELFAARLAGAATVFWNGPMGVFELAPFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMJJ (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A   + D   K VPA  IP+GWMGLDIGP SV+ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMJE (Phosphoglycerate kinase OS=Campylobacter jejuni GN=pgk PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A   + D   K VPA  IP+GWMGLDIGP SV+ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORGL (Phosphoglycerate kinase OS=Corynebacterium glutamicum GN=pgk PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP D+V A +F  D   ++V   +IP+GWM LDIGP SVK F E L T KT+ WNGPMGVFEF  F+
Sbjct:  265 GDKIVLPVDLVAASEFNKDAEKQIVDLDSIPEGWMSLDIGPESVKNFGEVLSTAKTIFWNGPMGVFEFAAFS 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORGB (Phosphoglycerate kinase OS=Corynebacterium glutamicum (strain R) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP D+V A +F  D   ++V   +IP+GWM LDIGP SVK F E L T KT+ WNGPMGVFEF  F+
Sbjct:  265 GDKIVLPVDLVAASEFNKDAEKQIVDLDSIPEGWMSLDIGPESVKNFGEVLSTAKTIFWNGPMGVFEFAAFS 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORDI (Phosphoglycerate kinase OS=Corynebacterium diphtheriae GN=pgk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            ++LP D+V A +FA+D  +K+V    IP+GWM LD+GP +V+ F E L T+KTV WNGPMGVFEF+ F+
Sbjct:  269 IVLPVDLVAAAEFASDAENKIVAIDEIPEGWMSLDVGPKTVEKFAEVLATSKTVFWNGPMGVFEFENFS 337          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CHLAD (Phosphoglycerate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  LLLP DVVIAD F+A+   +VV  TAIP GW  LDIGP +++ ++  + + +TVIWNGPMGVFE + FA
Sbjct:  260 GARLLLPVDVVIADAFSAEAQRQVVEVTAIPSGWRVLDIGPKTIELYSAEIRSARTVIWNGPMGVFELEPFA 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMC5 (Phosphoglycerate kinase OS=Campylobacter curvus (strain 525.92) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A  F+A+   K V    IP GWMGLDIGP SV+ F E L   +TV WNGPMGVFE DKF+
Sbjct:  262 GVKIYLPVDVVAAQSFSAESAVKYVTVQEIPSGWMGLDIGPASVRLFKEVLADAQTVWWNGPMGVFEMDKFS 333          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_MYCPA1.093e-1762.32Phosphoglycerate kinase OS=Mycobacterium paratuber... [more]
PGK_MYCA11.093e-1762.32Phosphoglycerate kinase OS=Mycobacterium avium (st... [more]
PGK_FRASC1.093e-1758.33Phosphoglycerate kinase OS=Frankia sp. (strain CcI... [more]
PGK_CAMJJ1.427e-1756.94Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_CAMJE1.427e-1756.94Phosphoglycerate kinase OS=Campylobacter jejuni GN... [more]
PGK_CORGL1.864e-1754.17Phosphoglycerate kinase OS=Corynebacterium glutami... [more]
PGK_CORGB1.864e-1754.17Phosphoglycerate kinase OS=Corynebacterium glutami... [more]
PGK_CORDI1.864e-1755.07Phosphoglycerate kinase OS=Corynebacterium diphthe... [more]
PGK_CHLAD1.864e-1755.56Phosphoglycerate kinase OS=Chloroflexus aggregans ... [more]
PGK_CAMC51.864e-1758.33Phosphoglycerate kinase OS=Campylobacter curvus (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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