CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_TRIVI (Phosphoglycerate kinase OS=Trichoderma viride GN=pgk1 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVP-ATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP+D + ADKF  D N+ +      IPDGWMGLD G  S+K + EA+D  KT++WNGP GVFEF+KFA
Sbjct:  278 VKIVLPTDFITADKFDKDANTGLATDKDGIPDGWMGLDCGDESIKLYKEAIDEAKTILWNGPAGVFEFEKFA 349          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LACF3 (Phosphoglycerate kinase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP D V+ADKFA D N+KVV    I DGWM LDIGP S++ F + L   KTV+WNGPMGVFE   FA
Sbjct:  265 GDKLVLPVDNVVADKFANDANTKVVEGD-IDDGWMALDIGPKSIEEFKKVLADAKTVVWNGPMGVFEMSNFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOBL (Phosphoglycerate kinase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  V     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOBK (Phosphoglycerate kinase OS=Clostridium botulinum (strain Okra / Type B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  V     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOBJ (Phosphoglycerate kinase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  V     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOB6 (Phosphoglycerate kinase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  V     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV L+LP DVV+A + +AD  S+V P T I DG  GLDIGP +++T+ + +   KTV+WNGPMGVFE D+FA
Sbjct:  259 GVRLILPEDVVVAAEISADAASRVEPVTTISDGMSGLDIGPATIETYAKEILGAKTVLWNGPMGVFEIDQFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMFF (Phosphoglycerate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A  F+A+   K V    IP GWMGLDIGP SV+ F E L   +T+ WNGPMGVFE DKF+
Sbjct:  263 GVKIYLPVDVVAAQTFSAESAIKYVSTQEIPTGWMGLDIGPASVRLFREVLSDAQTIWWNGPMGVFEMDKFS 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   +P DVV+AD+FA D N+KVVP  AIP  W  LDIGP + + + + +  +K V+WNGPMGVFE D FA
Sbjct:  257 GVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.434e-17
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVN  +P+DV++AD F+ D N+K+VP + IP  W  LDIG  + KT+ + +  +K V+WNGPMGVFE D FA
Sbjct:  257 GVNFYMPTDVLVADDFSNDANTKIVPVSEIPSDWEALDIGEETRKTYADVIKNSKLVVWNGPMGVFEIDAFA 328          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_TRIVI2.434e-1754.17Phosphoglycerate kinase OS=Trichoderma viride GN=p... [more]
PGK_LACF32.434e-1759.72Phosphoglycerate kinase OS=Lactobacillus fermentum... [more]
PGK_CLOBL2.434e-1756.94Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOBK2.434e-1756.94Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOBJ2.434e-1756.94Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB62.434e-1756.94Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CHLP82.434e-1755.56Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_CAMFF2.434e-1756.94Phosphoglycerate kinase OS=Campylobacter fetus sub... [more]
PGK_BACST2.434e-1754.17Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_BACLD2.434e-1751.39Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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