CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10996 contig Csv1_Contig10996:19..280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOBH (Phosphoglycerate kinase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  +     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVITEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOB1 (Phosphoglycerate kinase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP D V+ADKF  D +  +     I +G+MGLDIGP + K +++A+ + KTV+WNGPMGVFEF  FA
Sbjct:  262 GVNLLLPIDNVVADKFDKDASPVITEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMJR (Phosphoglycerate kinase OS=Campylobacter jejuni (strain RM1221) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A   + D   K VP   IP+GWMGLDIGP SV+ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVVAAPTCSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMJD (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A   + D   K VP   IP+GWMGLDIGP SV+ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVVAAPACSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMJ8 (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DVV A   + D   K VP   IP+GWMGLDIGP SV+ F E +   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVVAAPACSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCVP (Phosphoglycerate kinase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP D+V+A+KFAAD  ++ V A  IPD  MGLDIGP SVK F   L   KT+ WNGPMGVFEF  FA
Sbjct:  272 LHLPVDIVVAEKFAADSPAETVAADRIPDDKMGLDIGPESVKRFTALLSNAKTIFWNGPMGVFEFPAFA 340          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_GEOSW (Phosphoglycerate kinase OS=Geobacillus sp. (strain WCH70) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVN  +P DVV+AD+FA D N+KVV   AIP  W  LDIGP + + + + +  +K V+WNGPMGVFE D FA
Sbjct:  257 GVNFYMPVDVVVADRFANDANTKVVSIDAIPSDWEALDIGPKTRELYRDVIMKSKLVVWNGPMGVFEMDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORK4 (Phosphoglycerate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            ++LPSD+V+  +F A+   K V A  I DGWMGLD G  S+KTF E L+  KT+ WNGP+GVFEF+ FA
Sbjct:  267 IVLPSDIVVGKEFDANTEHKTVSADGIEDGWMGLDTGAESIKTFGERLNGAKTIFWNGPVGVFEFEAFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.422e-17
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSK-VVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V L+LP D  IADKF  D N+        IPDGWMGLD G  SVK F +A++ ++T++WNGP GVFEFDKFA
Sbjct:  278 VKLVLPVDFTIADKFDKDANTGYATDKDGIPDGWMGLDCGEESVKLFTQAINESQTILWNGPAGVFEFDKFA 349          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ARCB4 (Phosphoglycerate kinase OS=Arcobacter butzleri (strain RM4018) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.422e-17
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV L LP DVV A+ F A+  +K+     +P GWMGLDIGP S   F+EAL    T++WNGPMGV+E D+FA
Sbjct:  261 GVKLYLPVDVVAAEAFDAEAIAKIATIQEMPKGWMGLDIGPASALLFSEALSDANTILWNGPMGVYEMDRFA 332          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_CLOBH3.179e-1755.56Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB13.179e-1755.56Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CAMJR3.179e-1755.56Phosphoglycerate kinase OS=Campylobacter jejuni (s... [more]
PGK_CAMJD3.179e-1755.56Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_CAMJ83.179e-1755.56Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_MYCVP4.152e-1760.87Phosphoglycerate kinase OS=Mycobacterium vanbaalen... [more]
PGK_GEOSW4.152e-1754.17Phosphoglycerate kinase OS=Geobacillus sp. (strain... [more]
PGK_CORK44.152e-1755.07Phosphoglycerate kinase OS=Corynebacterium kroppen... [more]
PGK_NEUCR5.422e-1756.94Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_ARCB45.422e-1754.17Phosphoglycerate kinase OS=Arcobacter butzleri (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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