CK739608

Overview
NameCK739608
Unique NameCK739608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:528..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.078e-49
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  146 LGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.078e-49
Identity = 90/98 (91.84%), Postives = 97/98 (98.98%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+
Sbjct:  146 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 243
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.078e-49
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  146 LGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.325e-49
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  149 LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 246
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.325e-49
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.325e-49
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  150 LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 247
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.084e-49
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLA
Sbjct:  147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLA 244
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.084e-49
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct:  137 LGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 234
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.186e-48
Identity = 89/98 (90.82%), Postives = 97/98 (98.98%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLA
Sbjct:  159 LGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 256
[Close]
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.549e-48
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 3 
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 296
            LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLA
Sbjct:  146 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLA 243
The following BLAST results are available for this feature:
BLAST of CK739608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB29_MAIZE4.078e-4992.86Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_POLMU4.078e-4991.84Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_ORYSJ4.078e-4996.94Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA5.325e-4994.90Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_NICPL5.325e-4994.90Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PEA5.325e-4994.90Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB25_NICPL9.084e-4993.88Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_SOYBN9.084e-4994.90Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PINSY1.186e-4890.82Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_MAIZE1.549e-4894.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5995 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739608 ID=CK739608; Name=CK739608; organism=Citrus sinensis; type=EST; length=302bp
ACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGG
GCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGG
AGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTG
ATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTT
AAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTT
CGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCCGAC
CA
back to top