CK739609

Overview
NameCK739609
Unique NameCK739609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:19..258. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_MOUSE (60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.369e-11
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK 236
            VGLNKGH VTK    PR + R+ + +    FVR +IREV GFAPYE+R  ELLKV K
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSK 65
The following BLAST results are available for this feature:
BLAST of CK739609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL36_MOUSE3.369e-1157.8960S ribosomal protein L36 OS=Mus musculus GN=Rpl36... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5996 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739609 ID=CK739609; Name=CK739609; organism=Citrus sinensis; type=EST; length=240bp
GTTTCCGCAGCAACTCAGTTTCGTCGGAGGTGATGGCTCCGAAACAGCCA
AATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATATTGTGACGAAGAA
GGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAACAAGCAAAAGGG
TCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGCTTTGCACCCTAT
GAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGACA
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