CK739617

Overview
NameCK739617
Unique NameCK739617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:33..277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-14
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.896e-14
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.476e-14
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   67 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDV-KDPNSIFVF 243
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   K+  S+F F
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFGF 79          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.476e-14
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   76 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.476e-14
Identity = 35/46 (76.09%), Postives = 43/46 (93.48%), Query Frame = 1
Query:   73 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY 210
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMY 48          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.516e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.516e-14
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   73 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY 210
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMY 48          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.096e-13
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   76 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDV-KDPNSIFVF 243
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   KD  S+F F
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGF 60          
The following BLAST results are available for this feature:
BLAST of CK739617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_BOVIN8.510e-1572.7340S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_ORYLA1.452e-1469.0940S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24_TAKRU1.896e-1467.2740S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA2.476e-1465.0040S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ICTPU2.476e-1466.0740S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24B_SCHPO2.476e-1476.0940S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_MACFA5.516e-1470.9140S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24A_SCHPO5.516e-1473.9140S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_YEAST2.096e-1368.4240S ribosomal protein S24 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6004 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739617 ID=CK739617; Name=CK739617; organism=Citrus sinensis; type=EST; length=245bp
CCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCAGACTTT
TAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGGAAGT
TCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTT
CATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGTTGGC
AAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAA
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