CK739620

Overview
NameCK739620
Unique NameCK739620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:435..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.191e-33
Identity = 79/140 (56.43%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  129 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT---SFMLRAFWLS 518
            +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT    + P     E  AR   +++      W  L       P ILSKNGV FGEAVWFKAG+Q   +  L  L  P    +  + A W S
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 135          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.837e-31
Identity = 55/113 (48.67%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  135 GRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQ 446
            GR++MR+T      S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEA WFKAG+Q
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQ 116          

HSP 2 Score: 50.8322 bits (120), Expect = 2.837e-31
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2
Query:  446 IFSEGGLDYLGNPNLIHAQSILAIW 520
            IFSEGGLDYLGN +LIHAQSILAIW
Sbjct:  117 IFSEGGLDYLGNQSLIHAQSILAIW 141          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.179e-29
Identity = 76/158 (48.10%), Postives = 94/158 (59.49%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            A +A+  +A AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDT    S P     E  AR    ++ +A   W  L       P +L+K+GVKFGEAVWFKAGAQ   +  L  L  P+
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDP-----ETFARNRELEVIHA--RWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.598e-28
Identity = 63/143 (44.06%), Postives = 76/143 (53.15%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL----P*ILSKNGVKFGEAVWFKAGAQ 446
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT    + P           + + +   W+  + L    P +L++NGVKFGE VWFKAG+Q
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFA----KNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQ 135          

HSP 2 Score: 46.595 bits (109), Expect = 1.598e-28
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 2
Query:  446 IFSEGGLDYLGNPNLIHAQSILAIW 520
            IFSEGGL + GNP+L+HAQSILAIW
Sbjct:  136 IFSEGGLSHPGNPSLVHAQSILAIW 160          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.655e-27
Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KSAP S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.705e-26
Identity = 74/159 (46.54%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   39 MATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            MATS A   S F+GQ  L+  NE  RKVG  +  R+ M      AP  SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDT    + P             +++    S W  L       P +L+KNGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.705e-26
Identity = 73/160 (45.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +T AI  +A AG            KVG    GRITMR+TV     +A  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 147          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.480e-26
Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+   +FAGQ A++ S       G    GR++MR+TV    A  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.463e-26
Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+  S+FAG+ A++ S       G    G++TMR+TV  A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+  S+FAG+   +  S+E  R       G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++      W  L       P + ++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATF-------AKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPS 151          
The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB25_SOLLC4.191e-3356.43Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_SOYBN2.837e-3148.67Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_PHYPA8.179e-2948.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE1.598e-2844.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2B_SOLLC7.655e-2746.20Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_POLMU1.705e-2646.54Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_MAIZE1.705e-2645.63Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_TOBAC6.480e-2644.30Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB25_TOBAC8.463e-2643.75Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PETSP1.444e-2542.86Chlorophyll a-b binding protein 13, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6007 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCCGCTGGTTTATCAGCAGAC
CCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATG
GGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGG
back to top