CK739620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.191e-33 Identity = 79/140 (56.43%), Postives = 89/140 (63.57%), Query Frame = 3 Query: 129 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT---SFMLRAFWLS 518 +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ W L P ILSKNGV FGEAVWFKAG+Q + L L P + + A W S Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 135
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.837e-31 Identity = 55/113 (48.67%), Postives = 67/113 (59.29%), Query Frame = 3 Query: 135 GRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQ 446 GR++MR+T S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT + P +++ S W L P +L++NGVKFGEA WFKAG+Q Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQ 116 HSP 2 Score: 50.8322 bits (120), Expect = 2.837e-31 Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2 Query: 446 IFSEGGLDYLGNPNLIHAQSILAIW 520 IFSEGGLDYLGN +LIHAQSILAIW Sbjct: 117 IFSEGGLDYLGNQSLIHAQSILAIW 141
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.179e-29 Identity = 76/158 (48.10%), Postives = 94/158 (59.49%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 A +A+ +A AGQ+ ++ NE RKV R+TMRRTV + S IWYG DRPK+LGPFS +TPSYL GEF GDYGWDT S P E AR ++ +A W L P +L+K+GVKFGEAVWFKAGAQ + L L P+ Sbjct: 3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDP-----ETFARNRELEVIHA--RWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.598e-28 Identity = 63/143 (44.06%), Postives = 76/143 (53.15%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL----P*ILSKNGVKFGEAVWFKAGAQ 446 AT AI A G+ A + F GRITMR+T K P S WYG DR YLGP S PSYLTGEFPGDYGWDT + P + + + W+ + L P +L++NGVKFGE VWFKAG+Q Sbjct: 4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFA----KNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQ 135 HSP 2 Score: 46.595 bits (109), Expect = 1.598e-28 Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 2 Query: 446 IFSEGGLDYLGNPNLIHAQSILAIW 520 IFSEGGL + GNP+L+HAQSILAIW Sbjct: 136 IFSEGGLSHPGNPSLVHAQSILAIW 160
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 7.655e-27 Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT + P +++ W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.705e-26 Identity = 74/159 (46.54%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 39 MATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 MATS A S F+GQ L+ NE RKVG + R+ M AP SIWYG DRP YLGPFS PSYL+GEFPGDYGWDT + P +++ S W L P +L+KNGVKFGEAVWFKAG+Q + L L P+ Sbjct: 1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.705e-26 Identity = 73/160 (45.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 +T AI +A AG KVG GRITMR+TV +A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT + P +++ S W L P +LS+NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 147
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.480e-26 Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT + P +++ W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.463e-26 Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ S+FAG+ A++ S G G++TMR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT + P +++ W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25 Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ S+FAG+ + S+E R G++TMR+TV A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT + P +++ W L P + ++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATF-------AKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPS 151 The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bpback to top |