CK739620

Overview
NameCK739620
Unique NameCK739620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:435..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 73/165 (44.24%), Postives = 92/165 (55.76%), Query Frame = 3
Query:   39 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEAVWFKAGAQ   +  L  L +P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSP 162          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  135 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 73/165 (44.24%), Postives = 92/165 (55.76%), Query Frame = 3
Query:   39 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEAVWFKAGAQ   +  L  L +P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSP 162          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 153          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +T A+  S+FAG+ A++ S       G    G++TMR+T   A      S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFK G+Q   +  L  L  P+
Sbjct:    4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPS 152          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.644e-24
Identity = 67/160 (41.88%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            A++    S FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.644e-24
Identity = 67/160 (41.88%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            A++    S FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.065e-24
Identity = 69/166 (41.57%), Postives = 85/166 (51.20%), Query Frame = 3
Query:   39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            MA+  I   AFAG           + +GV  G     R+TMR+        SA  S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDT    + P +           +++      W  L       P +L++NGVKFGEAVWFKAGAQ   +  L  L  P+
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  135 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 67/160 (41.88%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +T A+   +FAG  A++ S       G    G+  MR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152          
The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB2A_PYRPY2.723e-2444.24Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN2.723e-2448.03Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2A_PINSY3.556e-2444.24Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA3.556e-2440.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_NICPL3.556e-2441.25Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_NICPL4.644e-2441.88Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_TOBAC4.644e-2441.88Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_PINSY6.065e-2441.57Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SPIOL1.765e-2346.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC1.765e-2341.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6007 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCCGCTGGTTTATCAGCAGAC
CCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATG
GGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGG
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