CK739620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23 Identity = 66/161 (40.99%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 +T A+ +AFAG+ S+ F R+TMR+T A S WYGPDR YLGP S + PSYLTGEFPGDYGWDT + P +++ S W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23 Identity = 64/160 (40.00%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ S FAG+ + + G+ TMR+T A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT + P +++ W L P + ++NGVKFGEAVW KAG+Q + L L P+ Sbjct: 4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPS 152
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23 Identity = 67/164 (40.85%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 MA S+ A + T + N +++G A R TMR++ + + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT + P +++ S W L P +LS+NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 154
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23 Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 3 Query: 123 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 + + TMR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT + P +++ S W L P +LS+NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 140
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23 Identity = 65/161 (40.37%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 +T A+ +AFAG+ S+ F R+TMR+T A S WYGPDR YLGP S + PSYLTGEFPGDYGWDT + P +++ W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23 Identity = 66/160 (41.25%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 AT A+ A AG+ A + E GRITMR++ +A S WYG DR YLGP S + PSYLTGEFPGDYGWDT + P +++ S W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 146
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.039e-22 Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 3 Query: 138 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNA-W----SSWLRLP*ILSK-NGVKFGEAVWFKAGAQ 446 R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDT + P+ AR ++ +A W + + P +LS+ GV+FGE VWFKAGAQ Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTF-----ARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQ 122 HSP 2 Score: 40.0466 bits (92), Expect = 9.039e-22 Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = 2 Query: 446 IFSEGGLDYLGNPNLIHAQSILA 514 IF++GGL+YLGN +LIHAQSI+A Sbjct: 123 IFADGGLNYLGNESLIHAQSIIA 145
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.277e-21 Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 3 Query: 165 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 ++ S W+GPD KYLGPFS ++PSYLTGEFPGDYGWDT + P +++ S W L P +LS+NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 113
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20 Identity = 57/129 (44.19%), Postives = 71/129 (55.04%), Query Frame = 3 Query: 138 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 RITMR+T ++ S WYG DR YLGP S + PSYLTGEFPGDYGWDT + P +++ S W L P +L++NGVKFGEAVWFKAG+Q + L L P+ Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.385e-20 Identity = 62/159 (38.99%), Postives = 81/159 (50.94%), Query Frame = 3 Query: 45 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488 T ++ S+FAG+ + + +G A R+ MR+T A Q S WYG DR YLGP S + PSYLTGEFPGDYGWDT + P +++ W L P +L++NGVKFGEA WFKAG+Q L L P+ Sbjct: 5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPS 151 The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bpback to top |