CK739620

Overview
NameCK739620
Unique NameCK739620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23
Identity = 66/161 (40.99%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23
Identity = 64/160 (40.00%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+  S FAG+      +       +   G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++      W  L       P + ++NGVKFGEAVW KAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPS 152          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 67/164 (40.85%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   39 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            MA S+    A +  T   +    N   +++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 154          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  123 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 140          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 65/161 (40.37%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 66/160 (41.25%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            AT A+   A AG+ A +   E          GRITMR++      +A  S WYG DR  YLGP S + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 146          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.039e-22
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  138 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNA-W----SSWLRLP*ILSK-NGVKFGEAVWFKAGAQ 446
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDT    + P+       AR    ++ +A W    +  +  P +LS+  GV+FGE VWFKAGAQ
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTF-----ARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQ 122          

HSP 2 Score: 40.0466 bits (92), Expect = 9.039e-22
Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  446 IFSEGGLDYLGNPNLIHAQSILA 514
            IF++GGL+YLGN +LIHAQSI+A
Sbjct:  123 IFADGGLNYLGNESLIHAQSIIA 145          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.277e-21
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  165 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +LS+NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 113          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20
Identity = 57/129 (44.19%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  138 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDT    + P             +++    S W  L       P +L++NGVKFGEAVWFKAG+Q   +  L  L  P+
Sbjct:   29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150          
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.385e-20
Identity = 62/159 (38.99%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   45 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATPT 488
            T ++  S+FAG+      +  +  +G A   R+ MR+T   A Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDT    + P             +++      W  L       P +L++NGVKFGEA WFKAG+Q      L  L  P+
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPS 151          
The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB29_MAIZE2.305e-2340.99Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_PETSP2.305e-2340.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_PEA3.010e-2340.85Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_CUCSA3.010e-2345.04Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE3.931e-2340.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ6.706e-2341.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNTE9.039e-2246.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA6.277e-2146.09Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_ORYSJ1.071e-2044.19Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_WHEAT2.385e-2038.99Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6007 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCCGCTGGTTTATCAGCAGAC
CCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATG
GGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAATATT
CTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTC
AGAGCATTTTGGCTATCTGG
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