CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNE 437
            +R+  E   L+    PGISA P EDN+  +   I G   + +EG  ++L L    +YP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W   E
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 47/125 (37.60%), Postives = 84/125 (67.20%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 428
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP ++P+E G F++ L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L S+Q+LL+ PN   P +   +  +K
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYK 131          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 50/137 (36.50%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+  +   G+SASP  DN+  +N +I+GP  +P+E G F+L L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   + ++L SIQ+LL+ PN   P +   A  +K +  +  +  +E
Sbjct:    7 RRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 57/131 (43.51%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDN-MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            +R+  E  +LLS     ISA P +DN + Y+   I GP  +PY G  FK+ L  P+ YP   P ++FL+ ++HPN+DK G ICLDILK+KWS    + T+LLS+Q+LL  PN   PL+   A+ W  +  E
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEE 141          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 3
Query:   36 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 428
            A   + +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+FLT  YHPN+D  G ICLDILK+KWS    +RT+LLSIQ+LL  PN D PL+ + A+ WK
Sbjct:   27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.405e-25
Identity = 61/159 (38.36%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   45 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASGA**HGGK 509
            NLP  II    KE   L ++P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P + PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++       GG+
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGGR 165          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 3
Query:    6 KNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHW 425
            KN   + + +   ++ +R+  E   L+    PGISA P  D N+ ++   I GP+ + YEG  FK+ +  P  YP + P + F + ++HPN+D  G ICLDILKDKWS    ++T+LLS+Q+LL  PN   PL+   A+ W
Sbjct:   15 KNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELW 155          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 68/160 (42.50%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   42 SNLPRRIIKETQRLLSEPAPGIS-------ASPSEDNMRYFNV--MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            + L  R+ KE + LLS+P  G S       A+ S D   +  +   I GP  + Y  G+F L++ +PE YP   P V F T IYHPNID  GRICLDIL    K  W P+L I TVL S++ LLS PNPDD L   +++ +K N       A+E T  YA
Sbjct:    5 ARLSLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 3
Query:    9 NKKKSILEMANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV---------------RFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYAS 485
            NK +   +M+N  L R  R  KE          GI     E+N+      I GP  +PY GG F++++ +PE YP   PKV               +F+T+I+HPNI  + G ICLDILKDKW+ +L +RTVLLS+QA+L +P P DP    +AK +  N      TA  WT  +A+
Sbjct:    7 NKMQFSDKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFAN 183          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 3
Query:   45 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLY 479
            NLP  II    KE   L ++P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P + PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC20_ARATH1.159e-2544.53Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC2_YARLI1.514e-2537.60Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_DEBHA1.514e-2536.50Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC11_YEAST1.977e-2543.51Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_HUMAN2.582e-2545.80Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2S_BOVIN4.405e-2538.36Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBC11_SCHPO5.753e-2539.01Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC37_ARATH7.513e-2542.50Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC21_CAEEL7.513e-2538.42Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBE2S_RAT1.674e-2439.60Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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