CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   39 NSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            NS     + K+ + L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P+ YP + P VRF + I+HPN+   GR+C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+    E
Sbjct:    2 NSQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDE 150          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   66 KETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            K+ + L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P+ YP + P VRF + ++HPN+   GR+C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+    E
Sbjct:   11 KQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDE 150          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEGEAGE 452
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK ++G+  E
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 160          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEGEAGE 452
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK ++G+  E
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 160          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = 3
Query:    6 KNKKKSILEMANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASGA 491
            KN   S+    NS  P   R+ K+ + L   P   ++    +++      +I+ P +  Y+GG F+      E YP+  PKV    KI+HPNID  G+ICL+IL++ WSPAL ++ ++L + +L   PN +DPL++  A+    ++ E G       RL  SGA
Sbjct:   17 KNAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNL----VRLAMSGA 176          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIA 416
            RRI  +  +LL         +   DNM+ F V   GP+++PY GG++K+ + LP EYP  +P + F+ +I+HPNID+L G +CLD++   WSP   +  +  + +  LL  PN  DPL+   A
Sbjct:    6 RRIETDVMKLLMSD---YEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAA 125          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 50/152 (32.89%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   39 NSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            NS+  RRI  E  ++ ++    A     +  ++N+  + V I GP  S YE   F+LE+ L  +YP ++PKV+F+T I H N++  G ICL+IL KD W+ +L I +++ SI  LL  PNP+DP +  +A  ++ ++    +  +++ + ++
Sbjct:    2 NSSNIRRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  129 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEA-GETAKEWTRLYASG 488
            +M ++  +I GPT++PYEGG + L++ + E YP++ P V F TKI HPNI    G +C+DILK  WSPA  +++  L+I +LLS  +   PL+ + AK  +T +  A     +  T LYA G
Sbjct:   33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  141 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYAS 485
            F V   GP  +PYEGGV+K+ + LP++YP  +P + F+ KI+HPNID+  G +CLD++   W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA+
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 150          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  141 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYAS 485
            F V   GP  +PYEGGV+K+ + LP++YP  +P + F+ KI+HPNID+  G +CLD++   W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA+
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 150          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC13_ARATH1.792e-1832.89Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_ARATH2.341e-1832.86Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UB2R1_MOUSE2.341e-1833.33Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN2.341e-1833.33Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC12_CANGA3.057e-1833.54NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC8_SCHPO3.993e-1837.40Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC1_MIMIV3.993e-1832.89Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC16_SCHPO3.993e-1840.98Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2H_MOUSE6.811e-1837.61Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN6.811e-1837.61Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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