CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  141 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 419
            FN+ I  PT   Y+   F+  + +P  YP   PKV   T +YHPNID  G +CL+IL+  W P L I TV+  +  L   PNPDDPL+++ A+
Sbjct:  108 FNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQ 199          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  150 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTR 473
            +I+ P +  Y  G F     +   YP   PKV+  T++YHPNID  G +CL+IL++ W+P L I +++  +Q L   PNP+DPL++  A   +TN  +     K+  R
Sbjct:   59 LIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMR 166          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            R+ K+   L    +  IS    +D++  F V I  P    Y  G F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I TV+  +  L + PN +DPL+ + A   + N
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSIK-PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDN 158          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  150 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAK 461
            +I+ P +  Y  G     L   E YP+  PKV  L KI+HPNID  G +CL+IL++ WSPAL +++++  +  L   PNP+DPL+++ AK     E E  E  +
Sbjct:   66 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            RI K+   L       I  S  +D + +   +++ P +  Y+GG F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   33 RIQKDINELNLPKTCEIEFSDHDDLLNF--KLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            RI K+   L       I  S  +D + +   +++ P +  Y+GG F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   33 RIQKDITELNLPKTCEIEFSDHDDLLNF--KLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 36/119 (30.25%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  123 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL------------DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            + N+  + V I+GP ++ Y+GG F   +  P+ YP + P VRF ++++HPN+   GR+C+            ++  ++W+P   + +++LSI ++LS+PN + P +   AK W+  + E
Sbjct:   34 DSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDE 152          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC12_DICDI1.285e-1643.01NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_DROME1.678e-1636.11NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
RCE1_ARATH2.191e-1636.51NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC12_YEAST2.862e-1639.42NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_XENTR3.738e-1634.13NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA4.881e-1634.13NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE4.881e-1634.13NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.881e-1634.13NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN4.881e-1634.13NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC7_WHEAT6.375e-1630.25Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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