CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:105..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 71/145 (48.97%), Postives = 97/145 (66.90%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASG 488
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+  +   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 75/143 (52.45%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE Q L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +  E A+EWTR YA
Sbjct:    4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            RRI+KE + L  +P    SA P+ ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +    A+ WT+ YA
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PK+ F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NPDDPL   IA  +KT+  +   TA+EWT+ YA
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+     + A+EWT+ YA
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  +++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNPDDPL   IA  +KT   +   TA+EWTR YA
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC28_ARATH3.252e-3648.97Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBCD1_DROME5.546e-3652.45Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC29_ARATH7.244e-3650.35Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
U2D2B_RAT1.614e-3550.35Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.614e-3550.35Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC4_YEAST2.108e-3551.05Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_CAEEL2.753e-3551.05Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_MAGGR2.753e-3551.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D2_XENLA3.595e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT3.595e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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