CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G+ A P+++     N+M     I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 416
            R+ +E   ++    P I    +E ++ ++ ++  GP  +PY+ G +   +   EEYP  AP +RF+T I H NI+  GR+C  IL   ++P ++I  +L  I  LL  P+ +DPL  N+A
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLA 1256          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 47/151 (31.13%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   54 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            R ++KE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   ++ E     +++ + YA
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 47/151 (31.13%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   54 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            R ++KE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   ++ E     +++ + YA
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  150 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 419
            + + P    Y GG +   +F+ + YPM  P V+ + +IYHPNID  G +CL++L++ W+PAL I+++++ I  L   PN  DPL+++ AK
Sbjct:   63 LAIKPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAK 152          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 44/129 (34.11%), Postives = 66/129 (51.16%), Query Frame = 3
Query:   30 EMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 416
            ++A   LP  +  +T+ L SE            N  Y  +    P +  Y GG F+  +   + YP+  P V+ L  IYHPNID  G ICL++L++ WSP + ++TV+L +  L   PN  DPL+   A
Sbjct:   38 DLATLELPTTVTLDTKCLGSE------------NKVYLRI---SPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9_PAGMA1.087e-1535.54SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC4_MIMIV1.087e-1533.33Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBE2F_XENTR1.420e-1531.13NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA1.420e-1531.13NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC12_KLULA1.420e-1538.89NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBC12_ASHGO1.420e-1534.11NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC9_XENTR1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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