CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  129 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 398
            N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   54 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWT 470
            +R+ KE + L  E P    +    EDN+  ++ ++L P + PY    F+L +  P EYP   P V+F T+IYHPN+D+ GR+CL I+ K  W  + +   VL ++  L++ P P  P+   +A+    +     + A+E+T
Sbjct:    5 KRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFT 144          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLY 479
            +R+ KE   L  E  P +    S+D       M+L P Q PY    F L +  P EYP+  P +RF TKIYHPNI + G +CL ++  + W P  +   VL ++  L+S PN ++P+   +A     +     + A+E+T  Y
Sbjct:    5 KRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLLPDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQY 147          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 434
            R+ K+   L    +  IS    ++++  F V I  P +  Y  G F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I TV+  +  L + PN +DPL+   A   + N
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDN 159          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWT 470
            +R+ KE + L  E  P +    S+D       M+L P Q PY    F++ +  P EYP   P +RF TKIYHPN+ + G +CL ++  + W P  +   VL ++  L+S PN ++P+   +A     N     + A+E+T
Sbjct:    5 KRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLLPDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFT 144          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 40/129 (31.01%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  117 PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            P  + + YF + ++ P +  Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   ++ +     +++ + YA
Sbjct:   57 PDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9_MOUSE1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.855e-1534.71SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.855e-1534.71SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9A_DANRE3.164e-1540.22SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UB2L6_BOVIN3.164e-1532.62Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UB2L6_RAT4.132e-1533.57Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UB12L_ARATH5.397e-1535.71Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UB2L6_MOUSE7.049e-1532.86Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBE2F_CHICK9.206e-1531.01NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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