CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  141 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            + V I G  ++ +EGG++KL +  PEEYP   PK RF   ++HPN+   G +CL IL ++  W PA+ I+ +LL IQ LL  PN   P        +K ++ E
Sbjct:   41 WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 48/151 (31.79%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   54 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            R +IKE   L +  P+      P E+ + +F + I  P +  Y GG F+ E+ +PE Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+ + A+H   ++ +     +++ + YA
Sbjct:   35 RLLIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   30 EMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            E A++    RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  + +VL+SIQ+L++
Sbjct:   53 ERASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMT 177          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   30 EMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            E A++    RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  + +VL+SIQ+L++
Sbjct:   53 ERASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMT 177          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 3
Query:   30 EMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            E A+     RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:   66 EKASQQCILRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 190          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            +R+ +E ++   +   G  A P +      +++ +   I G   + + GGV+ + +  P EYP   PKV+F    YHPN+   G ICL IL +   W PA+ ++ ++L +Q LL +PNP+ P  E   + +  N+ E
Sbjct:    7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 220          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 220          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 377
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P +YP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 218          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 41/129 (31.78%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  117 PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            P  + +  F + +  P +  Y+GG F+ E  +P+ Y M  PKV+ LTKI+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   ++ +  +   E+ + YA
Sbjct:   57 PDPNKLHCFQLTV-SPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9_SCHPO9.206e-1538.83SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBE2F_DANRE1.570e-1431.79NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2Z_XENTR2.051e-1433.60Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA2.051e-1433.60Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_DANRE2.051e-1434.40Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBC9_YEAST2.678e-1430.66SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBE2Z_RAT5.967e-1435.34Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE5.967e-1435.34Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN5.967e-1435.34Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2F_RAT7.793e-1431.78NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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