CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:105..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 34/105 (32.38%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  171 SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL--------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            S Y G + K  +  P  YP+  P ++F++K++HPNI + G++C+ IL              KDKW+P   IRT+++SI  +L++PN   P + + +  ++ N  E
Sbjct:   78 SLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEE 182          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.276e-12
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 3
Query:   33 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 413
            MA     +R+ KE + ++  P P I A P+EDN+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T    + PN     R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTIL---NGLLSFMTSDEATTGSI 125          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  102 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDIL--KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 419
            GI+A P  ++M  + V I G   S ++G VF+L +    EY  A P V+F+T  +HPN+D   G+ C+D L   +KW+    + ++LL++Q +LS P  ++P++   A+
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   33 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 377
            MA+    +R+ KE + +   P P I A+P EDN+  ++ +I GP ++PYE G +   L  P +YP   P +R LT   +    +  R+CL   D   D W+P+  + T+L  + + ++
Sbjct:    1 MASRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:    6 KNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 410
            ++ +K + ++A +    R+ KE     + P  G     S DN++ + + + G   + Y    ++L++  PE YPM AP+V F      HP+I   G ICLD+L D WSPA+++ ++ LSI ++LS+ +      +N
Sbjct:    6 ESTRKGLTKIATN----RLQKEFMEWQTNPPSGFKHRVS-DNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDN 136          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  102 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 419
            GI+A P  ++M  + V I G   S ++G VF+L +    EY  A P V+F+T  +HPN+D   G+ C+D L +  KW+    + ++LL++Q +LS P  ++P++   A+
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = 3
Query:   33 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 416
            MA+    +R+ KE + +++ P P I A+P EDN+  ++ +I GP  +PYE G +   L  P +YP   P +R +T   +    +  R+CL   D   + W+PA  + T+L     LLS    D+  + +++
Sbjct:    1 MASIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTIL---NGLLSFMTGDEQTTGSVS 126          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = 3
Query:   33 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 413
            MA     +R+ KE + ++  P P I A P+E+N+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T   +    +  R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATIL---NGLLSFMTGDESTTGSI 125          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 41/138 (29.71%), Postives = 68/138 (49.28%), Query Frame = 3
Query:   57 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEW 467
            R+ KE       P  G     + DN++ + + + G   + Y    + L++  P+ YPM AP+V F+     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+       ++N         G + +  + W
Sbjct:   19 RLQKELSEWQVNPPTGFKHRVT-DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWW 155          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 50/185 (27.03%), Postives = 80/185 (43.24%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASP------------SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT----------------------------------KIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEW 467
            +R+++E + +L E     SAS             SEDN   +   + GPT + Y+   ++L++ +P  YP   PK  F+                                   ++ HPNI    G ICLDIL+ KW+PA  + + L +I  LL+ P P  PL  ++A   K N+ +A  +  E+
Sbjct:    5 KRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEY 189          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
Y1A1_ENCCU3.274e-1232.38Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC6_YEAST4.276e-1232.58Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBE2U_HUMAN7.294e-1234.86Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC6_ASHGO7.294e-1231.36Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC17_ARATH7.294e-1230.88Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2U_MACFA1.625e-1134.86Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC6_KLULA2.122e-1130.53Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_CANGA2.122e-1130.77Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC18_ARATH2.122e-1129.71Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBCX_PICPA3.620e-1127.03Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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