CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.256e-28
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            +R++ + +RL  +P  GIS +P ++N+ ++N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  VL SIQ+LL  PNPD P +   A+ +  N+ E
Sbjct:    7 KRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKRE 136          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.256e-28
Identity = 55/137 (40.15%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  ++ ++ +  +  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.256e-28
Identity = 55/137 (40.15%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   E+YP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K ++ +  +  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.559e-28
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            +R+I++ +RL ++P  GIS +P  DN+  +N +I GP  +P+E G FKL L   E YP   P V+FL+K++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A  ++ N  E
Sbjct:    7 KRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKE 136          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.559e-28
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRL 476
            RR+I++ +RL S+   GIS SP+ DN+  +N +I GP ++P+E G F+L L   + YP   P VRF++K++HPNI   G +CLDIL+++WSP   +  +L S+Q+LL+ PNP  P + + A+ +K N  E     K+   L
Sbjct:    7 RRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVEL 147          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.260e-28
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYAS 485
            +RI  E + ++S+ +   S   + +N+  +  +I GP  +PYEGG+F L +  P +YP   PK  F T IYHPNI+  G IC++ILKDKW+PAL +  VLLSI  LL  PNPDDPL   I + +K N  +  + A+E+T  +A+
Sbjct:   11 QRIAMEYRAMISKESL-FSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHAN 153          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.260e-28
Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E     +E
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.260e-28
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   39 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYAS 485
            + N  RRI KE   +  +   GI      D++ +   M  GP  +PYEGG F +++ +P +YP   PK+ F TKIYHPN+  + G ICLDILKD+WSP   +++ L+S+Q+LL  P P +P    +A+ +  N  +   TA+EWT  YA+
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAA 151          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.482e-28
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +RI +E   L  +P P  SA P  DN+ ++   I+GP+ +PYEGG+F L++  P +YP   PK+ F T+IYH N+D  G + ++IL+D WSPAL I  VL +I+++   P P  P    IA+ + T+  +  E AKEWT  +A
Sbjct:   39 KRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.238e-27
Identity = 53/137 (38.69%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E     ++
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRD 143          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC3_ARATH4.256e-2843.08Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_KLULA4.256e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_CANGA4.256e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_USTMA5.559e-2842.31Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CRYNE5.559e-2841.13Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC31_ARATH7.260e-2843.06Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_ARATH7.260e-2839.42Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_SCHPO7.260e-2840.00Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
COP10_ARATH9.482e-2841.26Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC1_ARATH1.238e-2738.69Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
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