CK739633

Overview
NameCK739633
Unique NameCK739633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-27
Identity = 60/144 (41.67%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYA 482
            +R+ KE   +L  P    SA   +DN++ +   + GP  SP+E GVF +++ +P +YP   P ++F TKIYHPNI    G IC ++    WSP L+I  VL +I+++L+ PNPD+PL   IA+ +KT+     +TAKEWT+ YA
Sbjct:    5 KRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.112e-27
Identity = 52/137 (37.96%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P+V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.603e-27
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   45 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASGA 491
            NLP    RR+ KE   L S+P  GI   P+E+++    V I GP  +PY  G+F+++L L +++P A PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L+E   +    N  E    AK  T ++A G+
Sbjct:    7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQGS 159          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 3
Query:   45 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASGA 491
            NLP    R++ KE   L S+P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P A PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++A G+
Sbjct:    7 NLPPHIIRQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQGS 159          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 52/137 (37.96%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P+V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 51/137 (37.23%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN   P +   +  +K N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = 3
Query:   45 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKEWTRLYASG 488
            NLP    RR+ KE   L S+P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P A PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++A G
Sbjct:    7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 3
Query:    6 KNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHW 425
            K+   S+    N  + +R+ KE   L+     GISA P  +N+  +   I GP  + Y G  ++L L  P  YP AAP V+FLT  +HPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN + PL+   A  W
Sbjct:   19 KHSDDSMPVKDNHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW 158          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 50/137 (36.50%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGEAGETAKE 464
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN   P +   +  ++ N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CK739633 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 52/130 (40.00%), Postives = 85/130 (65.38%), Query Frame = 3
Query:   54 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEGE 443
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP  +P+E G FKL L   E+YP   P V+F++ ++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN   P +   A+  + N+ E
Sbjct:    7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKE 136          
The following BLAST results are available for this feature:
BLAST of CK739633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBCB_DICDI1.617e-2741.67Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC2_NECHA2.112e-2737.96Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UB2SC_XENLA3.603e-2741.18Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2S_XENTR6.146e-2740.52Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBC2_TRIHA6.146e-2737.96Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASPFU6.146e-2737.23Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UB2SB_XENLA6.146e-2741.45Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2C_DROME1.369e-2643.57Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC2_EMENI1.369e-2636.50Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_SCHPO1.788e-2640.00Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739633 ID=CK739633; Name=CK739633; organism=Citrus sinensis; type=EST; length=596bp
GGTTAAAAAACAAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTC
CCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACC
AGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGA
TGATCCTTGGTCCAACACAATCTCCATATGAAGGAGGGGTGTTCAAATTG
GAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATT
TCTTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTC
TTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTA
CTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCT
CTCTGAGAACATTGCCAAACACTGGAAAACAAATGAGGGCGAAGCGGGTG
AAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACAT
GGGGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATT
CACTGTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTG
back to top