CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.769e-19
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   89 LLLMIPLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNENEY 424
            +L +  L    Y+ YM KYDS+HG + + ++ +K++ TL    K + +   ++P+ + W +   + V+ESTG+F                VII++P KD  PMFV GVN NEY
Sbjct:   29 ILAINDLINVQYIAYMLKYDSIHGNF-NGKIVIKNE-TLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITSPPKDNTPMFVRGVNFNEY 139          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-19
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVND 102
            +KIGINGFGRIGR++ R+   R ++E++A+ND
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLRSNIEILAIND 34          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.819e-19
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   59 SSCRGTMLNSLLLMIPLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            +S +  ++N + +  P     YM YM +YD+VHG++   +  +  D+T +F   KP+ VF   NPE I W E   +YVVESTG FT               V+ISAPS DAPMFV+GVN   Y+  +
Sbjct:   18 ASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHGKF---DGSLSHDETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYEKNM 141          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 3.601e-19
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  107 LSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNENEYKPE 433
            L+  + + ++ KYDSVHG+    E+ V  +  ++ G K + V   R+PE + W E G + VVESTG FT               VIISAP+K+  +  V+GVN+++Y P+
Sbjct:   35 LTDANTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPK 142          

HSP 2 Score: 47.7506 bits (112), Expect = 3.601e-19
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVND 102
            VK+GINGFGRIGR V R  L+  D+E+VAVND
Sbjct:    3 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND 34          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.682e-19
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 2
Query:   80 LNSLLLMIPLSQPDYMTYMFKYDSVHGQWKH---HE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            +N + +  P    DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:   28 VNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.682e-19
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   80 LNSLLLMIPLSQPDYMTYMFKYDSVHGQWKH---HE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            +N + +  P    DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W   GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:   28 VNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGSAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.682e-19
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 2
Query:   80 LNSLLLMIPLSQPDYMTYMFKYDSVHGQWKH---HE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            +N + +  P    DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:   28 VNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.683e-19
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  107 LSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNENEY 424
            L   +Y+ YM KYDSVHG+++  E+ V+D   ++ G K + +    +P  + W E  A+ VVESTG F                VI+SAPSKD+ PMFV GVN   Y
Sbjct:   36 LLDAEYLAYMLKYDSVHGRFE-GEVAVEDGALIVNGNK-IRLTAEMDPANLKWNEVDADVVVESTGFFLTDETARKHIQAGAKKVIMSAPSKDSTPMFVYGVNHTSY 140          

HSP 2 Score: 41.2022 bits (95), Expect = 4.683e-19
Identity = 17/34 (50.00%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQR--DDVELVAVND 102
            +K+GINGFGRIGR+V R  ++   +D+++V +ND
Sbjct:    2 IKVGINGFGRIGRMVFRAAVKNFGNDIQIVGIND 35          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.280e-19
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   68 RGTMLNSLLLMIPLSQP----DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            R  +   +L ++ ++ P    +YM Y+FKYDSVHG+++  +++ KD K ++ G K +  F  R P  I WA+ GAEY+VESTGVF                V+I+AP    P +VVGVN ++Y P+
Sbjct:   18 RNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQG-KVETKDGKLIIDGHK-IAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSGVPTYVVGVNLDKYDPK 141          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.202e-19
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   68 RGTMLNSLLLMIPLSQP----DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            R TML   + ++ ++ P    +YM YMFKYDSVH  W  H    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               VII+APS DAPM+V+GVN  +Y P
Sbjct:   21 RATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.030e-18
Identity = 37/105 (35.24%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  119 DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENEYKP 430
            D +TY+FKYDS HG +         D  L+ GE+ V     ++ +++PW +   + VVESTG+F                V+I+AP+K D P FV+GVN  ++ P
Sbjct:   38 DLLTYLFKYDSTHGSFAPQA--TFSDGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDP 140          

HSP 2 Score: 41.9726 bits (97), Expect = 1.030e-18
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDD-VELVAVND 102
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNSPIEVVAIND 33          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3P_BUCBP2.769e-1934.51Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_PHYIN2.819e-1939.37Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_BACST3.601e-1936.36Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P3_CAEEL3.682e-1944.26Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P3_CAEBR3.682e-1944.26Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL3.682e-1944.26Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_BACFR4.683e-1940.19Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P1_AGABI6.280e-1938.10Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PC_CHLRE8.202e-1940.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CHLTR1.030e-1835.24Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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