CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.051e-31
Identity = 53/110 (48.18%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP---VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P    DYM YMFKYDS HG++K H +  +  K ++   K    + V   ++P EIPW   GAEYVVESTGVFT               VIISAPS DAPMFV+GVN ++Y
Sbjct:   36 PFINIDYMVYMFKYDSTHGRFKGH-VSAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVESTGVFTHTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNDKY 144          

HSP 2 Score: 57.7658 bits (138), Expect = 2.051e-31
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            K KIGINGFGRIGRLV R  +++D VE+VAVNDPFI
Sbjct:    3 KPKIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFI 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.052e-31
Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +P Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:   35 PFIEPHYAAYMLKYDSTHGQFKG-DIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSDI 143          

HSP 2 Score: 56.225 bits (134), Expect = 2.052e-31
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 3.479e-31
Identity = 55/107 (51.40%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P  +  Y  YM KYDS HG +K  E++V D K L+   K V  +  RNP +I W+ETGAEYVVESTGVFT               VIISAPS DAPM+V+GVNE++Y
Sbjct:   36 PFIETTYAAYMLKYDSSHGLFKG-EVEV-DGKDLVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVFTTTEKAKAHLVGGAKKVIISAPSADAPMYVMGVNESDY 140          

HSP 2 Score: 55.4546 bits (132), Expect = 3.479e-31
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            +K+GINGFGRIGR+V R  ++  D+E+VAVNDPFI T
Sbjct:    4 IKVGINGFGRIGRIVFRNAVEHPDIEVVAVNDPFIET 40          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.531e-31
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMF+YDS HG++ H  +K ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   34 PFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 51.6026 bits (122), Expect = 4.531e-31
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+G+NGFGRIGRLV R       V++VA+NDPFI
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFI 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 7.684e-31
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMF+YDS HG++ +  +K ++ K ++ G KP+T+F  R+P  I W E GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   34 PFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 52.373 bits (124), Expect = 7.684e-31
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+G+NGFGRIGRLV R  +    VE+VA+NDPFI
Sbjct:    2 VKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFI 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.684e-31
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMF+YDS HG++ +  +K ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   34 PFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 53.5286 bits (127), Expect = 7.684e-31
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+G+NGFGRIGRLV R     D V++VA+NDPFI
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFI 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.000e-30
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +P Y  YM KYDS HGQ+K  ++KV+ +   + G K +  +  ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:   35 PFIEPHYAAYMLKYDSQHGQFKG-DIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPSADAPMFVMGVNNETYTKDI 143          

HSP 2 Score: 56.225 bits (134), Expect = 1.000e-30
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.001e-30
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMFKYDS HG++ H  +K ++ K ++ G+  +T+F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y   L
Sbjct:   34 PFIDLNYMVYMFKYDSTHGRF-HGTVKAENGKLVINGQA-ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 53.5286 bits (127), Expect = 1.001e-30
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VKIG+NGFGRIGRLV R     D V++VA+NDPFI
Sbjct:    2 VKIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFI 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.696e-30
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +  Y  YM KYDS HG++K  ++K  D+   + G K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:   35 PFIETHYAAYMLKYDSTHGRFKG-DVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          

HSP 2 Score: 55.0694 bits (131), Expect = 1.696e-30
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIET 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.697e-30
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP------VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P  + DYM YMF YDS HG++     K+      L  EK       + VF +++P EI WAE GAEYV+ESTGVFT               V+ISAPS DAPM+V+GVNE++Y P
Sbjct:   36 PFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          

HSP 2 Score: 54.299 bits (129), Expect = 1.697e-30
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            K K+GINGFGRIGRL  R  +++D V++VA+NDPFI
Sbjct:    3 KPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFI 38          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3P_ONCVO2.051e-3148.18Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CURLU2.052e-3148.65Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P2_TRIKO3.479e-3151.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_FELCA4.531e-3148.65Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_MOUSE7.684e-3148.65Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_RAT7.684e-3147.75Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PHANO1.000e-3045.95Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_TRISI1.001e-3046.85Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_COCIM1.696e-3047.75Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_GLORO1.697e-3046.09Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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