CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.554e-28
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +  Y  YM KYDS HGQ+K   ++  ++  ++ G+K +  F  R+P  IPW  TGA+Y+VESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:   35 PFIETHYAAYMLKYDSTHGQFKG-TIETYEEGLIVNGKK-IRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSYTKDI 143          

HSP 2 Score: 51.6026 bits (122), Expect = 2.554e-28
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K+GINGFGRIGR+V R  +   +V++VAVNDPFI T
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIET 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.554e-28
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P  +  Y  YM KYDS HG + + E+K ++   L+   K V  +  R+P  IPW ETGA+YVVESTGVFT               VIISAPS DAPM+V+ VNE  Y
Sbjct:   36 PFIETKYAAYMLKYDSTHGIF-NGEIK-QEGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPSADAPMYVMVVNEKSY 140          

HSP 2 Score: 55.8398 bits (133), Expect = 2.554e-28
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTR 120
            +K+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T+
Sbjct:    4 IKVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETK 41          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.314e-28
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P   P+YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                V+ISAPS DAPMFV+GVNEN+Y P
Sbjct:  107 PFIDPEYMVYMFKYDSTHGRYKG-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          

HSP 2 Score: 46.595 bits (109), Expect = 3.314e-28
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI
Sbjct:   75 ELTVGINGFGRIGRLVLRACMEK-GVKVVAVNDPFI 109          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.326e-28
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DY  YMFKYDS HG++        DDK ++   K + V   R+P  +PW     +  ++STGVF                V+I+APS  APMFVVGVNE++Y  +L
Sbjct:   34 PFITTDYAAYMFKYDSTHGRYAGEV--THDDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTSDL 142          

HSP 2 Score: 59.6918 bits (143), Expect = 3.326e-28
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            V+I INGFGRIGRLV RV L R ++E+VAVNDPFITT
Sbjct:    2 VRIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITT 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.329e-28
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKT-LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P  + +YM YMFKYDSVHG++   E  V+ DK  +    + +    + +P +IPW E GA+YVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y P+
Sbjct:   28 PFIEGEYMAYMFKYDSVHGRY---EGDVQGDKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVESTGVFTTVDKCQAHLKGGAKKVVISAPSADAPMFVMGVNADKYDPK 135          

HSP 2 Score: 46.595 bits (109), Expect = 3.329e-28
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1
Query:   22 NGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            NGFGRIG LV R  L R DV++VA+NDPFI
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFI 30          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.331e-28
Identity = 47/110 (42.73%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    DY  YMFKYDS HG++K       D   L+   K V VF  ++P  +PW + G +  V+STGVF                V+I+APSK APMFVVGVNE++Y  E
Sbjct:   34 PFISVDYAAYMFKYDSTHGKYKGEVSH--DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          

HSP 2 Score: 53.9138 bits (128), Expect = 4.331e-28
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            V I INGFGRIGRLV R+ L+R ++++VA+NDPFI+
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFIS 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.635e-28
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +  Y  YM KYDS HGQ+K   ++  D+  ++ G+K +     R+P  IPW + GAEY+VESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:   35 PFIETHYAAYMLKYDSQHGQFKG-TIETYDEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYKKDI 143          

HSP 2 Score: 50.8322 bits (120), Expect = 5.635e-28
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K+GINGFGRIGR+V R  ++   V++VAVNDPFI T
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIET 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.239e-27
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P   P+YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW + G+ YVVESTGV+                V+ISAPS DAP FV+GVNEN Y P
Sbjct:  108 PFIDPEYMVYMFKYDSTHGRYKG-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSIEAASNHISAGAQRVVISAPSPDAPTFVMGVNENNYNP 214          

HSP 2 Score: 46.595 bits (109), Expect = 1.239e-27
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI
Sbjct:   76 ELTVGINGFGRIGRLVLRACMEK-GVKVVAVNDPFI 110          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.244e-27
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN + YKP++
Sbjct:   33 PFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPDM 141          

HSP 2 Score: 45.8246 bits (107), Expect = 1.244e-27
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            KIGINGFGRIGRLV R  + +    +VAVNDPFI
Sbjct:    3 KIGINGFGRIGRLVLRAAIDK-GASVVAVNDPFI 35          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.244e-27
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEY+VESTGVFT               VIISAPS DAPMFV GVN + YKP++
Sbjct:   33 PFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDM 141          

HSP 2 Score: 45.8246 bits (107), Expect = 1.244e-27
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            KIGINGFGRIGRLV R  + +    +VAVNDPFI
Sbjct:    3 KIGINGFGRIGRLVLRAAIDK-GANVVAVNDPFI 35          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3P_ASPNG2.554e-2843.24Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_COLGL2.554e-2846.73Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3PT_HUMAN3.314e-2844.04Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_CANGA3.326e-2838.74Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3PC_SCEVA3.329e-2845.95Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_KLUMA4.331e-2842.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_EMENI5.635e-2844.14Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PT_MACFA1.239e-2743.12Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROPS1.244e-2745.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.244e-2745.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
back to top