CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.618e-27
Identity = 50/113 (44.25%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP------VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P    DYM Y+FKYDS HGQ+K     V  D   L  +K       + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+VVGVN  +Y
Sbjct:   36 PFITIDYMVYLFKYDSTHGQFKG---TVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          

HSP 2 Score: 56.9954 bits (136), Expect = 1.618e-27
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT
Sbjct:    3 KANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFIT 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.618e-27
Identity = 50/113 (44.25%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP------VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P    DYM Y+FKYDS HGQ+K     V  D   L  +K       + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+VVGVN  +Y
Sbjct:   36 PFITIDYMVYLFKYDSTHGQFKG---TVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          

HSP 2 Score: 56.9954 bits (136), Expect = 1.618e-27
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT
Sbjct:    3 KANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFIT 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.572e-27
Identity = 51/111 (45.95%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               VIISAPS DAPMFV GVN + Y P++
Sbjct:   33 PFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDM 141          

HSP 2 Score: 45.8246 bits (107), Expect = 3.572e-27
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            KIGINGFGRIGRLV R  + +    +VAVNDPFI
Sbjct:    3 KIGINGFGRIGRLVLRAAIDK-GASVVAVNDPFI 35          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.572e-27
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    DY  YMFKYDS HG++        D+ +L+   K V VF  R+P  +PW E   +  ++STGVF                V+I+APS  APMFVVGVNE++Y  E
Sbjct:   34 PFISVDYAAYMFKYDSTHGRFAGEVSH--DENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYNGE 141          

HSP 2 Score: 55.0694 bits (131), Expect = 3.572e-27
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFIS 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.628e-27
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P   P+YM YMFKYDS HG++K   ++ K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                VI++APS DAPM V+GVNE +Y P
Sbjct:  131 PFIDPEYMVYMFKYDSTHGRYKG-TVEHKNGR-LVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNP 237          

HSP 2 Score: 47.7506 bits (112), Expect = 4.628e-27
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            ++ +GINGFGRIGRLV RV +++  V +VAVNDPFI
Sbjct:   99 ELTVGINGFGRIGRLVLRVCMEK-GVRVVAVNDPFI 133          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.649e-27
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM Y+FK+DS HG++K   +  +    ++ G+K +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN + Y P++
Sbjct:   33 PFIDVNYMVYLFKFDSTHGRFKG-TVSAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPDM 141          

HSP 2 Score: 45.4394 bits (106), Expect = 4.649e-27
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            KIGINGFGRIGRLV R  + +    +VAVNDPFI
Sbjct:    3 KIGINGFGRIGRLVLRAAVDK-GASVVAVNDPFI 35          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.026e-26
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DY  YMFKYDS HG++        DDK L+   K +  +  R+P ++PW +   + V+E+TGVFT               V+I+ PS  APMFV GVN+++Y  ++
Sbjct:   34 PFITNDYAAYMFKYDSTHGRYDGEV--THDDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAKKVVITGPSATAPMFVKGVNDDKYTSDV 142          

HSP 2 Score: 55.8398 bits (133), Expect = 1.026e-26
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            V++ INGFGRIGR+V R+ ++RD +++VA+NDPFIT
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFIT 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.328e-26
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P   P+YM YMFKYDS HG++K + ++ K+ + L+     +  +  ++P+EIPW+  G  YVVE TGV+                V+++APS DAPMFV+GVNE +Y P
Sbjct:  139 PFIDPEYMVYMFKYDSTHGRYKGN-VEHKNGQ-LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          

HSP 2 Score: 47.3654 bits (111), Expect = 1.328e-26
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            ++ +GINGFGRIGRLV RV +++  + +VAVNDPFI
Sbjct:  107 ELTVGINGFGRIGRLVLRVCMEK-GIRVVAVNDPFI 141          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.331e-26
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P    +YM YMFKYDS HG++K +    K    L+     ++VF  + P+EIPW   G+ +VVE+TGV+                V+I APS DAPMFV+GVNE EY P
Sbjct:   94 PFIDLEYMVYMFKYDSTHGRYKGNVEHKKGQ--LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          

HSP 2 Score: 46.2098 bits (108), Expect = 1.331e-26
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   13 IGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            +GINGFGRIGRLV R  +++  V++VAVNDPFI
Sbjct:   65 VGINGFGRIGRLVLRACMEK-GVKVVAVNDPFI 96          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.738e-26
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    DY  YMFKYDS HG++        +  TL+   K + VF  R+P ++PW E G +  ++STGVF                V+I+APS  APMFV+GVNE +Y  E
Sbjct:   34 PFITVDYAAYMFKYDSTHGKYAGDVQY--EGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYAGE 141          

HSP 2 Score: 53.9138 bits (128), Expect = 1.738e-26
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            VK+ ING G+IGRLV R+ L R +VE+VA+NDPFIT
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRANVEVVAINDPFIT 37          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3P4_CAEEL1.618e-2744.25Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL1.618e-2744.25Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P1_DROME3.572e-2745.95Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P2_KLULA3.572e-2740.91Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3PT_RAT4.628e-2743.12Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_DROHY4.649e-2745.95Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P1_CANGA1.026e-2636.94Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3PT_MOUSE1.328e-2641.28Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_BOVIN1.331e-2643.12Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_ASHGO1.738e-2640.00Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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