CK739675

Overview
NameCK739675
Unique NameCK739675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSE 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   63 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   63 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.649e-16
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   63 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.459e-16
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.518e-16
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.901e-16
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.901e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  105 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 296
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGK 84          
The following BLAST results are available for this feature:
BLAST of CK739675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
THIO_SHEEP1.553e-1649.38Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG1.553e-1650.63Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_RAT2.028e-1651.25Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_MOUSE2.028e-1651.25Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_BOVIN2.028e-1650.63Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_CALJA2.649e-1648.75Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN3.459e-1649.37Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU4.518e-1649.37Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT5.901e-1648.10Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_GEOCY5.901e-1659.38Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6062 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739675 ID=CK739675; Name=CK739675; organism=Citrus sinensis; type=EST; length=308bp
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAG
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