CK739675

Overview
NameCK739675
Unique NameCK739675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   75 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ +++
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEE 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  108 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVER 84          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 3
Query:   72 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            N  L++S +  +L+++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVD 89          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:    3 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 287
            P +AE+   EEG V      E + E L+ + E  +LV VDF+A WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  V  +PTF F K
Sbjct:  434 PFEAEIETLEEGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYK 526          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 3
Query:   42 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            VI   + + W   + KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQID 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   12 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 287
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYK 491          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:   84 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKV 90          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 28/80 (35.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   75 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            ++  K   + +++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D+
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDE 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 3
Query:   75 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEG 293
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNG 85          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   72 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            NE LQ    +++LV+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVD 83          
The following BLAST results are available for this feature:
BLAST of CK739675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TRX1_SCHPO1.777e-1240.48Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_CHLTR1.777e-1244.78Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
NGLY1_CAEEL1.777e-1239.74Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXND2_RAT2.320e-1240.00Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TXL1_SCHPO2.320e-1240.00Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
TXND2_MOUSE3.958e-1239.13Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_EMENI3.958e-1243.84Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_COPCM3.958e-1235.00Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_ECHGR5.169e-1243.84Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_CYAME6.751e-1244.87Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6062 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739675 ID=CK739675; Name=CK739675; organism=Citrus sinensis; type=EST; length=308bp
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAG
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