CK739676

Overview
NameCK739676
Unique NameCK739676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDF 336
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 70/112 (62.50%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD S++ LF+ II KV+E+++PGA+VLQCGADSL+ DRLGCFNLSI GHAECVKF++ FN+PLL+ GGGGYT  NVARCW  +TG+ L  E  +++P+++Y +YF PD+
Sbjct:  227 DGIDDSSFNRLFRTIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDF 338
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.834e-40
Identity = 72/112 (64.29%), Postives = 92/112 (82.14%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGI D SY  +FKPI+ KVME F P AVVLQCGADSL+GDRLG FNL++KGH EC +F RS+NVPL+++GGGGYT RNVARCW Y+T +A+  E  +++P ++Y+EYFGP+Y
Sbjct:  234 DGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNELPYNDYFEYFGPNY 345
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.951e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD++Y  +FKP+I  VM+ +RP  +VLQCGADSL  DRLGCFNL+IKGHAECV+F++SFN+P L+LGGGGYT+RNVARCW Y+T V +  E ++++P ++Y +++ PD+
Sbjct:  234 DGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGADSLRFDRLGCFNLTIKGHAECVRFVKSFNIPTLVLGGGGYTVRNVARCWTYETSVCVDTEVNNELPYNDYIQFYSPDF 345
[Close]
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.300e-39
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 2 
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY  LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV+F++SF +PLL+LGGGGYT+RNVARCW ++T + L     D++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVRNVARCWTFETSLLLEESISDELPYSEYFEYFAPDF 336
The following BLAST results are available for this feature:
BLAST of CK739676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HDAC3_XENTR5.834e-4059.82Histone deacetylase 3 OS=Xenopus tropicalis GN=hda... [more]
HDAC3_XENLA5.834e-4059.82Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
HDAC3_RAT5.834e-4059.82Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac... [more]
HDAC3_PONAB5.834e-4059.82Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=... [more]
HDAC3_MOUSE5.834e-4059.82Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=... [more]
HDAC3_HUMAN5.834e-4059.82Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
HDA9_ARATH5.834e-4062.50Histone deacetylase 9 OS=Arabidopsis thaliana GN=H... [more]
HDA1_CAEEL5.834e-4064.29Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDA12_DICDI9.951e-4059.82Histone deacetylase B OS=Dictyostelium discoideum ... [more]
HDAC3_TETNG1.300e-3960.71Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739676 ID=CK739676; Name=CK739676; organism=Citrus sinensis; type=EST; length=341bp
TGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAA
TCGGAAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGTCCTCCAATGT
GGTGCTGACTCATTGTCTGGGGATAGGTTAGGATGCTTCAATCTTTCAAT
TAAAGGTCATGCAGAATGTGTCAAATTTATGAGATCATTCAATGTGCCTC
TGTTGCTGCTGGGTGGTGGTGGTTACACTATTCGGAATGTTGCTCGTTGC
TGGTGCTACCAGACAGGAGTTGCACTTGGAGTAGAGGGTGATGACAAGAT
GCCACAGCATGAGTATTATGAGTATTTTGGTCCTGACTATA
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