CK739678

Overview
NameCK739678
Unique NameCK739678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.916e-28
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSP 481
            EA NPTP P +A  LL   WIL+YT++S L P+L+ G  PL +V+EISQ ID+ + T  N+   + P A+ S S  A F+V+SP R++++F+EG    P+++ S+ +P  V+  G KI L P
Sbjct:  182 EATNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGAAPLFKVDEISQEIDTNSMTIVNASTISSPFASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGP 303          

HSP 2 Score: 29.6462 bits (65), Expect = 5.916e-28
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 3
Query:    9 DNLKKALVDSFYGTDRGLNATSE 77
            + LK+ LVD+ YG+D G  A+SE
Sbjct:  147 EELKRCLVDTVYGSDLGFRASSE 169          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            EA NPTPAP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+ N    NS   + P A  S S  A FEVRSP R+++ F+EG +  P +  S+ +PE+V   G +I LS  K
Sbjct:  186 EALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLK 309          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            EA NPT AP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+++ +  NS   + P A  S S  A FEVR+P R+++ F+EG +  P++  S+ +PE+V   G +I+LS  K
Sbjct:  170 EALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLSIDNSTTLSSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLK 293          
The following BLAST results are available for this feature:
BLAST of CK739678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP3_ORYSJ5.916e-2843.44Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_ARATH4.270e-2646.77Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_BRACM3.615e-2544.35Plastid lipid-associated protein 3, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6065 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739678 ID=CK739678; Name=CK739678; organism=Citrus sinensis; type=EST; length=489bp
CAGAGATTGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACC
GATCGTGGATTGAATGCCACAAGTGAGACGAGGGCCTGAGATCGTTGAGC
TTATTACGCAGCCTTGAGGCTAAGAATCCAACCCCGGCTCCCACCGAGGC
CTTAACTCTGCTAAATGCCAAATGGATTCTTGTGTACACATCTTTTTCAG
GGTTGTTTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCGAGGGTGGAG
GAGATATCTCAGACAATTGACTCAGAGAACTTCACGGGCCAGAACTCCAT
CCGGTTTGCTGGGCCATTGGCTACAACTTCCATTAGTACCAATGCCAAGT
TTGAAGTGCGGAGCCCCAAGCGTGTGCAGATCAAGTTCGAGGAAGGGATC
ATTGGGACGCCTCAGGTAACTGATTCACTAGTGATACCGGAAAATGTCGA
ATTCTTGGGACCAAAGATTGATCTCTCACCCTTCAAAGG
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