CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_XANP2 (Dihydroorotate dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=pyrD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.563e-28
Identity = 65/143 (45.45%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDL    L D+A  ++A  +DG+I+ NTT+SRP  + +     ET               L  +Y L  G++P+IG GGI+SG DAY K+RAGA+LVQ+Y+A  + GP L+ +IK +LA  LK DGF SI +AVG D R
Sbjct:  216 VKVAPDLDDAALADVAEASLATGVDGIIMGNTTLSRPASLQSK-FKDETGGLSGKPLLALSTERLGALYRLVGGRLPIIGVGGIASGADAYAKVRAGASLVQIYSALVFHGPGLVTRIKTDLAARLKADGFASIADAVGVDVR 357          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_DROME (Dihydroorotate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Dhod PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 65/143 (45.45%), Postives = 93/143 (65.03%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVAL--RLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +K++PDLS +D++DI  V      R+DGLI+SNTT+SR + +  N +A+ET              ++ +MY LT GKIP+IG GG++SG DAY KI AGA+ VQ+YTA  Y GPAL+  IKAEL+  + R G  ++ + VG +
Sbjct:  257 LKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSREN-IEKNKLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEKIEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTN 398          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ANAD2 (Dihydroorotate dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pyrD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDLS E L++   VA+A    G++ +NTT+SR   V  +P A E              ++++  Y    G++P++G GG+   E AY KIRAGATLVQ YT   YGGPA + ++ A LA  L+RDGF ++ +AVGAD+R
Sbjct:  215 VKLAPDLSPEALDEAVDVAIAAGAAGIVATNTTLSRAG-VERHPRAAEAGGLSGAPLERLATDVVRRCYARAAGRVPIVGVGGVMDAEGAYAKIRAGATLVQAYTGLIYGGPAFVGRVNAGLARLLERDGFSTLSDAVGADHR 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ANADE (Dihydroorotate dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pyrD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDLS E L++   VA+A    G++ +NTT+SR   V  +P A E               +++  Y    G++P++G GG+   E AY KIRAGATLVQ YT   YGGP  + ++ A LA  L+RDGF ++ +AVGAD+R
Sbjct:  215 VKLAPDLSPEALDEAVDVAIAAGAAGIVATNTTLSRAG-VERHPRAAEAGGLSGAPLERLATEVVRRCYARAAGRVPIVGVGGVMDAEGAYAKIRAGATLVQAYTGLIYGGPGFVGRVNAGLARLLERDGFSTLSDAVGADHR 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYXXD (Dihydroorotate dehydrogenase OS=Myxococcus xanthus (strain DK 1622) GN=pyrD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 58/143 (40.56%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            +KIAPDLS E ++++  VA A +L GLI +NTT++RP     +P+AKE             N +++  +L + G +P+IG GG+ + +D Y K+RAGA++VQ+YT F Y GP ++  I   LA  L RDG+K + + +GA++R
Sbjct:  218 LKIAPDLSPEAVDEVVDVARAQKLAGLIATNTTVARP---FEHPLAKEAGGLSGAPVREPANAVIRRAWLRSGGALPIIGVGGVFTAQDVYEKLRAGASVVQVYTGFIYEGPGMVGNILPTLATLLARDGYKQVRDVIGAEHR 357          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ANASK (Dihydroorotate dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=pyrD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDLS E L++   VA+A    G++ +NTT+SR   V  +P A E              ++++  Y    G++P++G GG+   E AY KIRAGATLVQ YT   YGGP  + ++ A LA  L+RD F ++ +A+GAD+R
Sbjct:  215 VKLAPDLSPEALDEAVDVAIAAGAAGIVATNTTLSRAG-VERHPRAAEAGGLSGAPLERLATDVVRRCYARAAGRVPIVGVGGVMDAEGAYAKIRAGATLVQAYTGLIYGGPGFVGRVNAGLARLLERDEFSTLSDAIGADHR 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_METC4 (Dihydroorotate dehydrogenase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=pyrD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 65/147 (44.22%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR*LRR 441
            +KIAPD++ E L+ + A A+   + GL++SNTTI+RP  +  + VAKET              +L E YL    +IPLIG GGI S E A+ KIRAGA LVQLY+A  Y GP L+  IK  L++ L+ +G  S+   VG D   L R
Sbjct:  210 LKIAPDIALEGLDAMTATALRRGIQGLVVSNTTIARPSSLVESSVAKETGGLSGRPLFGLSTRLLAETYLRVGDRIPLIGVGGIDSAEAAWAKIRAGARLVQLYSALVYEGPGLVGTIKRGLSQRLRAEGLTSLAPVVGRDAAALAR 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRAJA (Dihydroorotate dehydrogenase OS=Bradyrhizobium japonicum GN=pyrD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KIAPDLS   L+D+  VA + R+DG+I+SNTTI+RP  +     AKE               ++ E Y+   G  PL+G GG+ SG  A  KIRAGA+L+QLY++  Y G  L+ +IK +L   L R G  S+ + VGAD
Sbjct:  213 LKIAPDLSLAQLDDVVQVARSRRVDGMIVSNTTIARPSTLREEMRAKEQGGLSGRPLFRLSTRMVAETYVRVEGAFPLVGVGGVDSGGAALTKIRAGASLIQLYSSLVYKGLGLVEEIKRDLTSTLLRTGRDSLSDIVGAD 353          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHOPT (Dihydroorotate dehydrogenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KIAPDLS  +L+D+  +A + R+DG+I++NTT+SR   +       E               ++ E ++   G  PLIG GGI SG  A  KIRAGATLVQLY+A  Y G  L+  IKA+LA  L R G  S+ E VGAD
Sbjct:  213 LKIAPDLSLGELDDVVHIARSRRVDGMIVANTTLSRSPTLRERTKMNEQGGLSGRPLFRLSTRMVAETFVRAEGAFPLIGVGGIDSGGAALTKIRAGATLVQLYSALVYKGLGLVESIKADLASTLLRTGRDSLAEIVGAD 353          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SACKL (Dihydroorotate dehydrogenase, mitochondrial OS=Saccharomyces kluyveri GN=URA9 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVA--KETXXXXXXXXXXXXNNILKEMYLLTR-GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDL++ +LE IA  A   ++DG+I+SNTTI RPD +     A   +T               LK +Y  T+  ++ L+GCGGISSG+DA    +AGAT VQLYT++AY GP LI  IK E+ E LK++G K+  + +G D
Sbjct:  302 VKIAPDLTEPELESIAVAAKKSKVDGIIVSNTTIQRPDSLVTRDEALKSQTGGLSGKPLKPFALKALKTVYKYTKDSELVLVGCGGISSGQDAIEFAKAGATFVQLYTSYAYKGPGLIAHIKDEVTEELKKEG-KTWNQIIGED 444          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_XANP24.563e-2845.45Dihydroorotate dehydrogenase OS=Xanthobacter autot... [more]
PYRD_DROME5.959e-2845.45Dihydroorotate dehydrogenase, mitochondrial OS=Dro... [more]
PYRD_ANAD25.959e-2843.36Dihydroorotate dehydrogenase OS=Anaeromyxobacter d... [more]
PYRD_ANADE2.264e-2742.66Dihydroorotate dehydrogenase OS=Anaeromyxobacter d... [more]
PYRD_MYXXD1.468e-2640.56Dihydroorotate dehydrogenase OS=Myxococcus xanthus... [more]
PYRD_ANASK1.917e-2641.26Dihydroorotate dehydrogenase OS=Anaeromyxobacter s... [more]
PYRD_METC42.504e-2644.22Dihydroorotate dehydrogenase OS=Methylobacterium c... [more]
PYRD_BRAJA4.722e-2542.55Dihydroorotate dehydrogenase OS=Bradyrhizobium jap... [more]
PYRD_RHOPT1.052e-2443.97Dihydroorotate dehydrogenase OS=Rhodopseudomonas p... [more]
PYRD_SACKL1.374e-2445.14Dihydroorotate dehydrogenase, mitochondrial OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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