CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHOE4 (Dihydroorotate dehydrogenase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 60/155 (38.71%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR-----PDP---------VSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDLS ED++ +A +AV L L G++ +NTTI R     PD          +S  PVA  +              +L+ +Y     K+ +I  GGI + + A+ +I AGATLVQ YT F YGGP     I   +A+ ++  GF SI +AVGA+
Sbjct:  211 VKIAPDLSDEDVDAVADLAVELGLAGIVATNTTIRRDGLKTPDAEVAALGAGGLSGAPVADRSL------------EVLRRLYARVGDKMTIISVGGIETADQAWERILAGATLVQGYTGFIYGGPFWARSIHKGIAKRVRAAGFSSIAQAVGAE 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCSS (Dihydroorotate dehydrogenase OS=Mycobacterium sp. (strain MCS) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  D+++IA +AV L L G++ +NTTISR            P  VS  PVA  +              +L+ +Y     ++ LI  GGI + +DA+ +I +GA+L+Q YT F YGG      I   LA  L+ +GF S+ +AVG+  R
Sbjct:  213 VKIAPDLSDADVDEIADLAVELGLAGIVATNTTISRAGLKTPGVEELGPGGVSGAPVAARSL------------EVLRRLYRRAGDRLVLISVGGIETADDAWERITSGASLLQGYTGFVYGGGLWAKHIHDGLATRLRAEGFTSLSDAVGSAMR 355
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCSK (Dihydroorotate dehydrogenase OS=Mycobacterium sp. (strain KMS) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  D+++IA +AV L L G++ +NTTISR            P  VS  PVA  +              +L+ +Y     ++ LI  GGI + +DA+ +I +GA+L+Q YT F YGG      I   LA  L+ +GF S+ +AVG+  R
Sbjct:  213 VKIAPDLSDADVDEIADLAVELGLAGIVATNTTISRAGLKTPGVEELGPGGVSGAPVAARSL------------EVLRRLYRRAGDRLVLISVGGIETADDAWERITSGASLLQGYTGFVYGGGLWAKHIHDGLATRLRAEGFTSLSDAVGSAMR 355
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCSJ (Dihydroorotate dehydrogenase OS=Mycobacterium sp. (strain JLS) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  D+++IA +AV L L G++ +NTTISR            P  VS  PVA  +              +L+ +Y     ++ LI  GGI + +DA+ +I +GA+L+Q YT F YGG      I   LA  L+ +GF S+ +AVG+  R
Sbjct:  213 VKIAPDLSDADVDEIADLAVELGLAGIVATNTTISRAGLKTPGVEELGPGGVSGAPVAARSL------------EVLRRLYRRAGDRLVLISVGGIETADDAWERITSGASLLQGYTGFVYGGGLWAKHIHDGLATRLRAEGFTSLSDAVGSAMR 355
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIBY (Dihydroorotate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 351
            +K+APDL+ ED+E I+A  +  ++DGLI++NTT+SR + V N P   E+               L+      +G+IPLIG GGI SGE A  K +AGATLVQ+Y+   Y GP L+ Q
Sbjct:  213 LKVAPDLTAEDVEFISAQLLDFKIDGLIVTNTTLSR-EGVENLPYGNESGGLSGAPVFEKSTECLRLFAQTLKGQIPLIGVGGILSGEQAAAKQQAGATLVQIYSGLIYTGPTLVKQ 328
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIBT (Dihydroorotate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=pyrD PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 351
            +K+APDL+ ED+E I+A  +  ++DGLI++NTT+SR + V N P   E+               L+      +G+IPLIG GGI SGE A  K +AGATLVQ+Y+   Y GP L+ Q
Sbjct:  213 LKVAPDLTAEDVEFISAQLLDFKIDGLIVTNTTLSR-EGVENLPYGNESGGLSGAPVFEKSTECLRLFAQTLKGQIPLIGVGGILSGEQAAAKQQAGATLVQIYSGLIYTGPTLVKQ 328
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIBC (Dihydroorotate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 351
            +K+APDL+ ED+E I+A  +  ++DGLI++NTT+SR + V N P   E+               L+      +G+IPLIG GGI SGE A  K +AGATLVQ+Y+   Y GP L+ Q
Sbjct:  213 LKVAPDLTAEDVEFISAQLLDFKIDGLIVTNTTLSR-EGVENLPYGNESGGLSGAPVFEKSTECLRLFAQTLKGQIPLIGVGGILSGEQAAAKQQAGATLVQIYSGLIYTGPTLVKQ 328
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIB5 (Dihydroorotate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 351
            +K+APDL+ ED+E I+A  +  ++DGLI++NTT+SR + V N P   E+               L+      +G+IPLIG GGI SGE A  K +AGATLVQ+Y+   Y GP L+ Q
Sbjct:  213 LKVAPDLTAEDVEFISAQLLDFKIDGLIVTNTTLSR-EGVENLPYGNESGGLSGAPVFEKSTECLRLFAQTLKGQIPLIGVGGILSGEQAAAKQQAGATLVQIYSGLIYTGPTLVKQ 328
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIB3 (Dihydroorotate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQ 351
            +K+APDL+ ED+E I+A  +  ++DGLI++NTT+SR + V N P   E+               L+      +G+IPLIG GGI SGE A  K +AGATLVQ+Y+   Y GP L+ Q
Sbjct:  213 LKVAPDLTAEDVEFISAQLLDFKIDGLIVTNTTLSR-EGVENLPYGNESGGLSGAPVFEKSTECLRLFAQTLKGQIPLIGVGGILSGEQAAAKQQAGATLVQIYSGLIYTGPTLVKQ 328
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SHEB5 (Dihydroorotate dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL+ E++E+IA   +  + DG I +NTT++R D VS    A E+              ++K++ +  +G+IP+IG GGI+S +DA  K  AGAT+VQ+Y+ F Y GP LI +I
Sbjct:  216 LKIAPDLTIEEIENIAQALIKNKFDGAIATNTTLTR-DGVSGLANANESGGLSGKPLTELSIKVIKQLAICLKGQIPIIGVGGINSADDALAKFDAGATMVQIYSGFIYQGPKLIKEI 332
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_RHOE45.056e-1938.71Dihydroorotate dehydrogenase OS=Rhodococcus erythr... [more]
PYRD_MYCSS5.056e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium sp. ... [more]
PYRD_MYCSK5.056e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium sp. ... [more]
PYRD_MYCSJ5.056e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium sp. ... [more]
PYRD_ACIBY5.056e-1943.59Dihydroorotate dehydrogenase OS=Acinetobacter baum... [more]
PYRD_ACIBT5.056e-1943.59Dihydroorotate dehydrogenase OS=Acinetobacter baum... [more]
PYRD_ACIBC5.056e-1943.59Dihydroorotate dehydrogenase OS=Acinetobacter baum... [more]
PYRD_ACIB55.056e-1943.59Dihydroorotate dehydrogenase OS=Acinetobacter baum... [more]
PYRD_ACIB35.056e-1943.59Dihydroorotate dehydrogenase OS=Acinetobacter baum... [more]
PYRD_SHEB56.604e-1941.53Dihydroorotate dehydrogenase OS=Shewanella baltica... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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