CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCTU (Dihydroorotate dehydrogenase OS=Mycobacterium tuberculosis GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  DL+DIA +AV L L G++ +NTT+SR            P  +S  P+A+                +L+ +Y     ++ LI  GGI + +DA+ +I AGA+L+Q YT F YGG      I   +A  L   GF S+ EAVG+  R
Sbjct:  211 VKIAPDLSDSDLDDIADLAVELDLAGIVATNTTVSRDGLTTPGVDRLGPGGISGPPLAQRAV------------QVLRRLYDRVGDRLALISVGGIETADDAWERITAGASLLQGYTGFIYGGERWAKDIHEGIARRLHDGGFGSLHEAVGSARR 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCTA (Dihydroorotate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  DL+DIA +AV L L G++ +NTT+SR            P  +S  P+A+                +L+ +Y     ++ LI  GGI + +DA+ +I AGA+L+Q YT F YGG      I   +A  L   GF S+ EAVG+  R
Sbjct:  211 VKIAPDLSDSDLDDIADLAVELDLAGIVATNTTVSRDGLTTPGVDRLGPGGISGPPLAQRAV------------QVLRRLYDRVGDRLALISVGGIETADDAWERITAGASLLQGYTGFIYGGERWAKDIHEGIARRLHDGGFGSLHEAVGSARR 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCBT (Dihydroorotate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  DL+DIA +AV L L G++ +NTT+SR            P  +S  P+A+                +L+ +Y     ++ LI  GGI + +DA+ +I AGA+L+Q YT F YGG      I   +A  L   GF S+ EAVG+  R
Sbjct:  211 VKIAPDLSDSDLDDIADLAVELDLAGIVATNTTVSRDGLTTPGVDRLGPGGISGPPLAQRAV------------QVLRRLYDRVGDRLALISVGGIETADDAWERITAGASLLQGYTGFIYGGERWAKDIHEGIARRLHDGGFGSLHEAVGSARR 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCBP (Dihydroorotate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  DL+DIA +AV L L G++ +NTT+SR            P  +S  P+A+                +L+ +Y     ++ LI  GGI + +DA+ +I AGA+L+Q YT F YGG      I   +A  L   GF S+ EAVG+  R
Sbjct:  211 VKIAPDLSDSDLDDIADLAVELDLAGIVATNTTVSRDGLTTPGVDRLGPGGISGPPLAQRAV------------QVLRRLYDRVGDRLALISVGGIETADDAWERITAGASLLQGYTGFIYGGERWAKDIHEGIARRLHDGGFGSLHEAVGSARR 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCBO (Dihydroorotate dehydrogenase OS=Mycobacterium bovis GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS  DL+DIA +AV L L G++ +NTT+SR            P  +S  P+A+                +L+ +Y     ++ LI  GGI + +DA+ +I AGA+L+Q YT F YGG      I   +A  L   GF S+ EAVG+  R
Sbjct:  211 VKIAPDLSDSDLDDIADLAVELDLAGIVATNTTVSRDGLTTPGVDRLGPGGISGPPLAQRAV------------QVLRRLYDRVGDRLALISVGGIETADDAWERITAGASLLQGYTGFIYGGERWAKDIHEGIARRLHDGGFGSLHEAVGSARR 353
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_HELPY (Dihydroorotate dehydrogenase OS=Helicobacter pylori GN=pyrD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            +KIAPDL  +D+ +I   A+     G+I +NTTI +    S     KE               I KE+      K  L+  GGIS  ++AY +I+ GA+L+Q+Y+AF Y GP L   I  +L + L++DGF S+ EA+GAD R
Sbjct:  213 LKIAPDLETDDMLEIVNSAIGAGAHGIIATNTTIDK----SLVFAPKEMGGLSGKCLTKKSREIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNILKDLVKLLQKDGFLSVKEAIGADLR 351
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SHESW (Dihydroorotate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL+ E++E+IA   +  + DG I +NTT++R D VS    A E+              +++++    +G+IP+IG GGI+S EDA  K  AGAT+VQ+Y+ F Y GP LI +I
Sbjct:  216 LKIAPDLTIEEIENIADALIKNKFDGAIATNTTLTR-DGVSGLANANESGGLSGKPLTELSTKVIRQLAACLKGQIPIIGVGGINSAEDALAKFDAGATMVQIYSGFIYQGPKLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SHEPC (Dihydroorotate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=pyrD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL+ E++E+IA   +  + DG I +NTT++R D VS    A E+              +++++    +G+IP+IG GGI+S EDA  K  AGAT+VQ+Y+ F Y GP LI +I
Sbjct:  216 LKIAPDLTIEEIENIADALIKNKFDGAIATNTTLTR-DGVSGLANANESGGLSGKPLTELSTKVIRQLAACLKGQIPIIGVGGINSAEDALAKFDAGATMVQIYSGFIYQGPKLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_NEIMA (Dihydroorotate dehydrogenase OS=Neisseria meningitidis serogroup A GN=pyrD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 369
            VKIAPDL +  +EDIA V  ++ +DG+I +NTTI +   + ++P+A E             N +LK +     GK+P+IG GGI  G DA  KIR GAT VQ+Y+   Y GPAL+ +    LA
Sbjct:  213 VKIAPDLDEAQIEDIAHVVKSVEMDGIIATNTTIDKSS-LGSHPLAGEQGGLSGLPVHEKSNRVLKLLADHIDGKLPIIGVGGIMEGGDAADKIRLGATAVQVYSGLIYKGPALVKECLKALA 334
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MYCVP (Dihydroorotate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISR------------PDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D+++IA +AV L L G++ +NTTISR            P  +S  PVA+                +L+ +Y     ++ LI  GGI + +DA+ +I +GA+L+Q YT F YGG      I   LA  L+  GF  + EAVG+  R
Sbjct:  211 VKIAPDLADQDIDEIADLAVELGLAGIVATNTTISRAGLATPGVDALGPGGISGPPVARRAL------------EVLRRLYARVGDRLVLISVGGIETADDAWERIVSGASLLQGYTGFVYGGGLWAKDINDGLAARLRGHGFSGLAEAVGSAAR 353
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_MYCTU6.604e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium tube... [more]
PYRD_MYCTA6.604e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium tube... [more]
PYRD_MYCBT6.604e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium bovi... [more]
PYRD_MYCBP6.604e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium bovi... [more]
PYRD_MYCBO6.604e-1938.06Dihydroorotate dehydrogenase OS=Mycobacterium bovi... [more]
PYRD_HELPY6.604e-1937.76Dihydroorotate dehydrogenase OS=Helicobacter pylor... [more]
PYRD_SHESW8.625e-1941.53Dihydroorotate dehydrogenase OS=Shewanella sp. (st... [more]
PYRD_SHEPC8.625e-1941.53Dihydroorotate dehydrogenase OS=Shewanella putrefa... [more]
PYRD_NEIMA8.625e-1942.28Dihydroorotate dehydrogenase OS=Neisseria meningit... [more]
PYRD_MYCVP8.625e-1936.77Dihydroorotate dehydrogenase OS=Mycobacterium vanb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
back to top