CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_POLNA (Dihydroorotate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLK 381
            VKIAPDL    +  IA       +DG++ +NTT+SR D V     A+E             N ++ ++        P+IG GG+ SG DA  KI+AGA +VQ+YT   Y GPAL+    AE A  +K
Sbjct:  226 VKIAPDLDDAQVAVIATTLKRHAMDGVVATNTTLSR-DAVKGLRHAEEAGGLSGAPVLEASNRVIGQLRAALGKGFPIIGVGGVMSGLDAVSKIKAGADVVQIYTGLIYKGPALV----AEAANSIK 347
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ENTS8 (Dihydroorotate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VKIAPDLS E+L  +A   V   +DG+I +NTT+ R   V       ET              I++ +    +G++P+IG GGI S   A  KI AGA+L+Q+Y+ F + GP L+ +I   L
Sbjct:  216 VKIAPDLSLEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKYCDETGGLSGRPLQLKSTEIIRLLSQELQGRLPIIGVGGIDSVIAAREKIAAGASLIQIYSGFIFKGPPLVKEIVTHL 336
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_EDWI9 (Dihydroorotate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS E+L  IA   V  ++DG+I +NTT+ R      N  A ++              I++++    +G++P+IG GGI S   A  K++AGA+LVQ+Y+ F + GP L+ +I
Sbjct:  216 VKIAPDLSHEELVQIADSLVRHQIDGVIATNTTLDRSLVNGLNHCA-QSGGLSGRPLQLKSTEIIRQLSAELQGRLPIIGVGGIDSVIAAREKMQAGASLVQIYSGFIFKGPGLVKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOUT (Dihydroorotate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=pyrD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOSM (Dihydroorotate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOLU (Dihydroorotate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOL6 (Dihydroorotate dehydrogenase OS=Escherichia coli O6 GN=pyrD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOL5 (Dihydroorotate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECOK1 (Dihydroorotate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ECO81 (Dihydroorotate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  +A   V   +DG+I +NTT+ R   V       +T              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSQELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_POLNA3.750e-1437.80Dihydroorotate dehydrogenase OS=Polaromonas naphth... [more]
PYRD_ENTS83.750e-1437.70Dihydroorotate dehydrogenase OS=Enterobacter sakaz... [more]
PYRD_EDWI93.750e-1438.14Dihydroorotate dehydrogenase OS=Edwardsiella ictal... [more]
PYRD_ECOUT3.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli (... [more]
PYRD_ECOSM3.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli (... [more]
PYRD_ECOLU3.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli O... [more]
PYRD_ECOL63.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli O... [more]
PYRD_ECOL53.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli O... [more]
PYRD_ECOK13.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli O... [more]
PYRD_ECO813.750e-1438.98Dihydroorotate dehydrogenase OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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