CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SCHPO (Dihydroorotate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=ura3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSII 405
            VKIAPDL++E+L DIA V    ++DG+I+ NTT+ RP  + +    +ET             N L+ +       IP+IGCGGISSG+DA    RAGAT+VQ+YTA  Y GP +  +IK E+   LK   +  II
Sbjct:  305 VKIAPDLNEEELTDIADVLKKCKIDGVIVGNTTVQRPKTLKSTSHVEETGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGGISSGKDAIEYARAGATMVQVYTALGYDGPVIAHKIKQEILAELKGKRWVDII 439          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHOPS (Dihydroorotate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB5) GN=pyrD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KIAPDL+  +L+D+  +A + ++DG+I++NTT+SR   +       E               ++ E Y+   G  PLIG GGI SG  A  KIRAGA+LVQLY+A  Y G  L+  IK +LA  L R G  S+ E VGAD
Sbjct:  213 LKIAPDLTLGELDDVVHIARSRKVDGMIVANTTLSRSPLLRERTRMNEQGGLSGRPLFRLSTRMVAETYVRAEGAFPLIGVGGIDSGGAALTKIRAGASLVQLYSALIYKGLGLVESIKTDLASTLLRTGRDSLAEIVGAD 353          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHILO (Dihydroorotate dehydrogenase OS=Rhizobium loti GN=pyrD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 64/136 (47.06%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL + +LEDIAA  V  R+DG+I+SNTTISRP P+ +  V +ET              +L +M  L    I +IG GG+ S E A  KIRAGA LVQLYT   Y GPAL  +I A +A   + +  KSI E
Sbjct:  210 LKIAPDLVEAELEDIAAEVVEKRIDGIIVSNTTISRP-PLRSGDVGRETGGLSGKPLFERSTIVLAKMRKLLGPGIAIIGVGGVDSAETALEKIRAGADLVQLYTGMIYAGPALPGRIVAGMARFCETERLKSIGE 344          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_NOCFA (Dihydroorotate dehydrogenase OS=Nocardia farcinica GN=pyrD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-22
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNP---VAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS ED++ +A +AV L L G++ +NTTI R D +  +P    A                 +L+ +Y     ++ LI  GGI + E AY+++ AGA+L+Q YT F YGGP    +I   LAE L+RDG+ S+ EAVGA++R
Sbjct:  216 VKIAPDLSDEDIDAVADLAVELGLAGIVATNTTIRR-DGLHTDPEDVAAMGAGGLSGAPVADRSLEVLRRLYRRVGDRLALISVGGIETPEQAYQRVLAGASLLQGYTGFIYGGPFWTRKIHRGLAELLRRDGYTSLTEAVGAEHR 360          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_HALMA (Dihydroorotate dehydrogenase OS=Haloarcula marismortui GN=pyrD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-22
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VK++PDL +  +ED   +   L LDG++ +NTT  RP  +  +P A ET              +++  ++  R  +P++G GG+S+ E AYRKIRAGA+LVQLYT   Y GP++  +I + L + L  DGF S+ +AVGAD
Sbjct:  212 VKLSPDLPEPAVEDALDLVTELDLDGVVATNTTTERPASL-RSPNAVETGGLSGKPIENQATEMVR--FVAERVDVPVVGVGGVSTAEGAYRKIRAGASLVQLYTGLVYRGPSIAREINSGLRDLLAEDGFDSVEDAVGAD 349          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_DEIRA (Dihydroorotate dehydrogenase OS=Deinococcus radiodurans GN=pyrD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-22
Identity = 55/139 (39.57%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVG 417
            VK+APDL   D E      +     GLIISNTT+SR     ++P  ++               ++++ Y LTRG++P++G GG+ S EDAY K+ AGA LV++Y+A  Y GP L+ +I A L + L+RDG ++I + VG
Sbjct:  231 VKLAPDLHPADFEASVGAVLDAGASGLIISNTTLSRGG--LSHPNREQAGGLSGRPLTDRSTELVRDAYRLTRGQVPIVGVGGVFSAEDAYAKLLAGADLVEVYSALIYRGPGLVREINAGLVKLLERDGVRNIADVVG 367          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD2_KLULA (Dihydroorotate dehydrogenase, mitochondrial OS=Kluyveromyces lactis GN=URA9 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-22
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV--SNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGK-IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDL +E+++ IA  A   ++DG+IISNTTI RP  +   ++ +  +                LK M   T+G  + L+GCGGISSG DA    +AGA++V+LYTA+AY GP LI +IK E  E LK++  K+  E +G D +
Sbjct:  301 VKVAPDLVEEEIKSIAEAAKKSKVDGIIISNTTIQRPTTLITEDSDLVSQAGGLSGKPLKPLALKALKTMAKYTKGSGLVLVGCGGISSGADAIEFAKAGASMVELYTAYAYKGPGLIAKIKDETTELLKKEN-KTWSEIIGEDIK 445          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ROSCS (Dihydroorotate dehydrogenase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pyrD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.864e-22
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KI+PD + + +E++        +   I +NTT++R    S   +A ET              +++ +Y LTRG  P+IG GG+ + +DAY  IRAGA LVQLYT   Y GPA+  +IK  LA+ L+RDGF S+ +A G D
Sbjct:  218 LKISPDETLDQIEEVVRAGCEAGVAAFIATNTTLAREGLRSR--LANETGGLSGRPLAPRARQVIRAIYRLTRGTPPVIGVGGVLTADDAYAHIRAGARLVQLYTGMVYAGPAIAREIKRGLAQLLRRDGFVSVTQATGVD 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_CANGA (Dihydroorotate dehydrogenase, mitochondrial OS=Candida glabrata GN=URA9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.864e-22
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTR----GKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDL++ +L+ I   A   ++DG+I+SNTTI RP+ +                        LK M  +++      + L+GCGGISSG+DA    +AGAT VQLYT++AY GPALI +IK E+AE LK++G K+ +E +G D
Sbjct:  295 VKIAPDLTEPELQSIVEAAKKSKVDGIIVSNTTIQRPNTLKTQDETLRNQVGGLSGKPLKPF-ALKAMKAVSKYAKDSDLVLVGCGGISSGKDAIEFAKAGATFVQLYTSYAYVGPALIARIKDEVAEELKKEG-KTWMEIIGED 437          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ASHGO (Dihydroorotate dehydrogenase, mitochondrial OS=Ashbya gossypii GN=URA9 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVS--NNPVAKETXXXXXXXXXXXXNNILKEMYLLTRG-KIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDL++ +L+ IA  A    +DG+I+SNTTI RPD +   +  +  +                L+ ++  T+   + L+GCGGISSG+DA    +AGA  VQLYTA+AY GP LI +IK E+ E L+ +G K+ +E +G D
Sbjct:  300 VKIAPDLTEPELQSIAEAAKKSSIDGIIVSNTTIQRPDSLYTVDEELKNQAGGLSGKPVKPFALKALRTIHQYTKDTNLVLVGCGGISSGQDAIEFAKAGAHFVQLYTAYAYRGPGLIARIKDEVTEELRNEG-KTWMEIIGQD 442          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_SCHPO4.419e-2342.96Dihydroorotate dehydrogenase, mitochondrial OS=Sch... [more]
PYRD_RHOPS4.419e-2341.84Dihydroorotate dehydrogenase OS=Rhodopseudomonas p... [more]
PYRD_RHILO4.419e-2347.06Dihydroorotate dehydrogenase OS=Rhizobium loti GN=... [more]
PYRD_NOCFA1.286e-2241.78Dihydroorotate dehydrogenase OS=Nocardia farcinica... [more]
PYRD_HALMA1.286e-2240.43Dihydroorotate dehydrogenase OS=Haloarcula marismo... [more]
PYRD_DEIRA1.286e-2239.57Dihydroorotate dehydrogenase OS=Deinococcus radiod... [more]
PYRD2_KLULA1.286e-2241.78Dihydroorotate dehydrogenase, mitochondrial OS=Klu... [more]
PYRD_ROSCS2.864e-2239.01Dihydroorotate dehydrogenase OS=Roseiflexus casten... [more]
PYRD_CANGA2.864e-2242.76Dihydroorotate dehydrogenase, mitochondrial OS=Can... [more]
PYRD_ASHGO6.381e-2241.67Dihydroorotate dehydrogenase, mitochondrial OS=Ash... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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