CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALPB (Dihydroorotate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALPA (Dihydroorotate dehydrogenase OS=Salmonella paratyphi A GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALNS (Dihydroorotate dehydrogenase OS=Salmonella newport (strain SL254) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALHS (Dihydroorotate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALG2 (Dihydroorotate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIEEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALEP (Dihydroorotate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALDC (Dihydroorotate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALCH (Dihydroorotate dehydrogenase OS=Salmonella choleraesuis GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALA4 (Dihydroorotate dehydrogenase OS=Salmonella agona (strain SL483) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +    +G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332
[Close]
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PSEMY (Dihydroorotate dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 1 
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLK 381
            +KIAPD+S E+   +A+  +   +D +I +NTT+SR + V     A E              +I+K +     G++P+I  GGI+ G  A  KI AGA+LVQ+Y+ F Y GPALI +    +A   K
Sbjct:  215 IKIAPDMSDEETALVASALLGADMDAVIATNTTLSR-EGVEGLAHADEAGGLSGSPVRDKSTHIVKVLAGELGGRLPIIAVGGITEGRHAAEKIAAGASLVQIYSGFIYKGPALIREAVDAIAALRK 340
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_SALPB4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella paratyp... [more]
PYRD_SALPA4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella paratyp... [more]
PYRD_SALNS4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella newport... [more]
PYRD_SALHS4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella heidelb... [more]
PYRD_SALG24.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella gallina... [more]
PYRD_SALEP4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella enterit... [more]
PYRD_SALDC4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella dublin ... [more]
PYRD_SALCH4.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella cholera... [more]
PYRD_SALA44.897e-1438.14Dihydroorotate dehydrogenase OS=Salmonella agona (... [more]
PYRD_PSEMY4.897e-1436.22Dihydroorotate dehydrogenase OS=Pseudomonas mendoc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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