CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ENT38 (Dihydroorotate dehydrogenase OS=Enterobacter sp. (strain 638) GN=pyrD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS E+L  +A   V   +DG+I +NTT+ R   V+      E               I++ +    +G++P+IG GGI S   A  K+ AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSVEELIQVADSLVRHNIDGVIATNTTLDR-SLVNGMKHCDEMGGLSGRPVQLKSTEIIRALSAELKGRLPIIGVGGIDSVIAAREKMAAGATLVQIYSGFIFKGPQLIKEI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SALAR (Dihydroorotate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=pyrD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL +E+L  +A   +   +DG+I +NTT+ R   V      ++T              I++ +     G++P+IG GGI S   A  KI AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLCEEELIQVADSLLRHNIDGVIATNTTLDR-SLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELNGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACTPJ (Dihydroorotate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=pyrD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL+ E++  +A   V  ++DG+I  NTT+SR DPV     A+                ++  +     G +P+IG GGI S      KI AGA+L+Q+Y+A  Y GPALI  +
Sbjct:  212 LKIAPDLTDEEIASVADGLVRHKIDGVIAGNTTLSR-DPVVGLKNAEHQGGLSGNPLNTLSTRLISTLAKELNGALPIIGSGGIHSVASGQEKIDAGASLLQVYSAMIYQGPALIQNL 328          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_THET8 (Dihydroorotate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +K+APDLS + L+++ A+A   RL GL+  NTT++R    S  P AKE               +L+ +     G + L+  GG+ +  D + +++AGA+LVQ+YT F YGGP    ++   L   ++ +G  S+ E
Sbjct:  210 LKVAPDLSPKALDEVLALAKKHRLQGLVAVNTTLAREGLKS--PWAKEAGGLSGRPLKGRALEVLRHLAEGAEG-LALVSVGGVETPLDLWERLKAGASLVQVYTGFVYGGPLFPRRLLLGLLRLMEAEGVSSLGE 342          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SERP5 (Dihydroorotate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  IA   V   +DG+I +NTT+ R   +      ++               +++ + L  +G++P+IG GGI S   A  K+ AGA+LVQ+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLSEEELIQIADSLVRHNIDGVIATNTTLDRK-LIQGLNYCEQMGGLSGRPLQASSTEVIRRLSLELQGRLPIIGVGGIDSLMAAREKMAAGASLVQIYSGFIFKGPRLIKDI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PROMH (Dihydroorotate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL+ E+L  +A   V   +DG+I +NTT+ +   VS      E               I++++    +G +P+IG GGI S   A  K+ AGA+L+Q+Y+ F Y GPALI  I
Sbjct:  216 VKIAPDLTHEELIQVADSLVRHHIDGVIATNTTLDK-SLVSGLDHCNEAGGLSGRPVQSKSTQIIRQLNEELKGALPIIGVGGIDSLTAAREKMDAGASLIQVYSGFIYHGPALIKSI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_NITEU (Dihydroorotate dehydrogenase OS=Nitrosomonas europaea GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 345
            +KIAPDL  E +  IA++ +  R+D +I +NTT +R + V + P   E               +++++    +  IP+IG GGI S  DA  KI AGA+LVQ+Y+   Y GP L+
Sbjct:  214 IKIAPDLESEQITVIASLLMKHRMDAVIATNTTTAR-EGVEHLPRGNEKGGLSGAPLTERSTTVIRQLANHLQHAIPIIGAGGIMSARDAQLKIEAGASLVQIYSGLIYRGPDLV 327          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_METPP (Dihydroorotate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLK 381
            VKIAPDL +  ++ IAA      +DG+I +NTT+SR D V     A E             N ++ ++        P+IG GG+ SG DA  K   GA +VQ+YT   Y GPAL+    +E A  LK
Sbjct:  222 VKIAPDLDEAQVDVIAATLKKNAVDGVIATNTTLSR-DAVRGQAHATEVGGLSGRPVFEASNRVVGQLRAALGAGYPIIGVGGVMSGADARAKRDVGADVVQIYTGLIYRGPALV----SEAARALK 343          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BORPD (Dihydroorotate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 50/130 (38.46%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDG 390
            VKIAPDLS+  ++ IA +     +DG+I +NTT+SR D V+  P A E               ++  +         +IG GGI SG  A  KI AGA  VQLYT   Y GPAL+     E A  +K  G
Sbjct:  224 VKIAPDLSEAQIDAIADILPRYGVDGVIATNTTLSR-DAVAGQPHANEAGGLSGAPVHALSLAVIARLRQRMGPGAAIIGVGGILSGRQAREKIDAGANAVQLYTGLIYRGPALV----GECASAIKAAG 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BARBK (Dihydroorotate dehydrogenase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSI 402
            +K+APDL++++L+D+AA       DGL++SNTT+ R   +  +    E               +L +M       I +IG GG+   + A  KI+AGA LVQ Y+   Y GP L   I  ++ + +++DG  +I
Sbjct:  212 LKLAPDLTEQELDDVAAELSLSDFDGLVVSNTTLFRQG-LKKSAFMNEGGGLSGRPLFERSTIVLAKMRQKLGKDIAIIGVGGVWDAQTALEKIKAGADLVQFYSGMVYEGPDLAKNITKDVLQMMQQDGVDTI 344          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_ENT386.396e-1438.98Dihydroorotate dehydrogenase OS=Enterobacter sp. (... [more]
PYRD_SALAR8.354e-1438.14Dihydroorotate dehydrogenase OS=Salmonella arizona... [more]
PYRD_ACTPJ8.354e-1437.29Dihydroorotate dehydrogenase OS=Actinobacillus ple... [more]
PYRD_THET81.091e-1333.09Dihydroorotate dehydrogenase OS=Thermus thermophil... [more]
PYRD_SERP51.091e-1337.29Dihydroorotate dehydrogenase OS=Serratia proteamac... [more]
PYRD_PROMH1.091e-1338.14Dihydroorotate dehydrogenase OS=Proteus mirabilis ... [more]
PYRD_NITEU1.091e-1336.52Dihydroorotate dehydrogenase OS=Nitrosomonas europ... [more]
PYRD_METPP1.091e-1337.80Dihydroorotate dehydrogenase OS=Methylibium petrol... [more]
PYRD_BORPD1.091e-1338.46Dihydroorotate dehydrogenase OS=Bordetella petrii ... [more]
PYRD_BARBK1.091e-1332.09Dihydroorotate dehydrogenase OS=Bartonella bacilli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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