CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_XYLFA (Dihydroorotate dehydrogenase OS=Xylella fastidiosa GN=pyrD PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKR 384
            +K+APDLS  D++  A V   + +DG+I +NTT++RP  +  + +A ET              +L+ +       I LIG GGI  G DA  K+ AGA LVQ YT   + GP L+     E  E ++R
Sbjct:  216 IKMAPDLSDSDIDAAARVLNEMSVDGVIATNTTVTRP-LLRQHRLASETGGLSGAPLLGQSTLVLRRLRTHLPETIALIGVGGICCGADAVAKMAAGANLVQCYTGLIFKGPQLV----GECVEAIRR 338          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BUCAP (Dihydroorotate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPD--PVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KI+PDLSK++L  I+   +  ++DG+I +NTT+       + NN   KE             N+++  +Y   + KIP+IG GGI+S   A  KI  GA L+Q+Y+   Y GP  I +I
Sbjct:  216 IKISPDLSKKELIHISNKLIHYKIDGVIATNTTLDHSSIPKIKNN---KEEGGLSGLPLQKKSNDVISILYKNLKRKIPIIGVGGINSINSAREKIMCGANLIQVYSGLIYHGPNFIREI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PSEPF (Dihydroorotate dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 345
            +KIAPD++ E+   +A   +   +D +I +NTT+SR   V       E              + +K +     GK+P+I  GGI+ G+ A  KI AGA+LVQ+Y+ F Y GPALI
Sbjct:  215 IKIAPDMTDEETAQVAQALIETGMDAVIATNTTLSRVG-VEGMEHGDEAGGLSGAPVREKSTHTVKVLASELGGKLPIIAAGGITEGKHAAEKIAAGASLVQIYSGFIYKGPALI 328          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_KLEP3 (Dihydroorotate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL  E+L  +A   V   +DG+I +NTT+ R   V       ET              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLLPEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKHCDETGGLSGRPLQLKSTEIIRMLSAELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_CITK8 (Dihydroorotate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+++L  +A   V   +DG+I +NTT+ R   V       ET              I++ +    + ++P+IG GGI S   A  K+ AGATLVQ+Y+ F + GP LI +I
Sbjct:  216 VKIAPDLSEDELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKNCDETGGLSGRPLQLKSTEIIRRLSQELKEQLPIIGVGGIDSVIAAREKMAAGATLVQIYSGFIFKGPQLIKEI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BAUCH (Dihydroorotate dehydrogenase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 42/122 (34.43%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VKI PD+++ +L  +A + V  ++DG+I +NTT SR + V     + ++              +++ +    +GK+P+IG GGI S   A  K+ AGATL+Q+Y++F + GP LI  I ++L
Sbjct:  216 VKITPDMTESELIQMADLLVQHKIDGIIATNTTTSR-ELVHGLDHSSQSGGLSGRPLQLMSTEVIRILSSKLQGKLPIIGVGGIDSLISAREKMAAGATLIQIYSSFIFHGPRLIKDIISDL 336          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_THET2 (Dihydroorotate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +K+APDLS + L+++ A+    RL GL+  NTT++R    S  P+A+E               +L+ +     G + L+  GG+ +  D + +++AGA+LVQ+YT F YGGP    ++   L   ++ +G  S+ E
Sbjct:  210 LKVAPDLSPKALDEVLALTKKHRLQGLVAVNTTLAREGLKS--PLAREAGGLSGRPLKRRALEVLRHLAEGAEG-LALVSVGGVETPLDLWERLKAGASLVQVYTGFVYGGPLFPRRLLLGLLRLMEAEGVSSLGE 342          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_KLEP7 (Dihydroorotate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL  E+L  +A   V   +DG+I +NTT+ R   V       ET              I++ +     G++P+IG GGI S   A  KI AGA+LVQ+Y+ F + GP LI +I
Sbjct:  216 IKIAPDLLPEELIQVADSLVRHNIDGVIATNTTLDR-SLVQGMKHCDETGGLSGRPLQLKSTEIIRMLSAELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_CHLSY (Dihydroorotate dehydrogenase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNP-VAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPAL 342
            VKIAPDLS   +E++  V     + G+I +NTTISR      +P +A E              ++++ +  LT  ++P+IG GGI + +D  R + AGA+L+Q+YT   Y GP L
Sbjct:  233 VKIAPDLSDTAIEEVLTVCADHGVAGIIATNTTISREGLTGVDPRLAAEAGGLSGRPLIARALHVVRLIARLTGNRLPIIGVGGIHTPDDGLRMLEAGASLIQIYTGLVYYGPLL 347          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_CHLAA (Dihydroorotate dehydrogenase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNP-VAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPAL 342
            VKIAPDLS   +E++  V     + G+I +NTTISR      +P +A E              ++++ +  LT  ++P+IG GGI + +D  R + AGA+L+Q+YT   Y GP L
Sbjct:  233 VKIAPDLSDTAIEEVLTVCADHGVAGIIATNTTISREGLTGVDPRLAAEAGGLSGRPLIARALHVVRLIARLTGNRLPIIGVGGIHTPDDGLRMLEAGASLIQIYTGLVYYGPLL 347          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_XYLFA1.425e-1335.94Dihydroorotate dehydrogenase OS=Xylella fastidiosa... [more]
PYRD_BUCAP1.425e-1335.83Dihydroorotate dehydrogenase OS=Buchnera aphidicol... [more]
PYRD_PSEPF1.861e-1336.52Dihydroorotate dehydrogenase OS=Pseudomonas fluore... [more]
PYRD_KLEP31.861e-1338.98Dihydroorotate dehydrogenase OS=Klebsiella pneumon... [more]
PYRD_CITK81.861e-1338.14Dihydroorotate dehydrogenase OS=Citrobacter koseri... [more]
PYRD_BAUCH1.861e-1334.43Dihydroorotate dehydrogenase OS=Baumannia cicadell... [more]
PYRD_THET22.431e-1331.62Dihydroorotate dehydrogenase OS=Thermus thermophil... [more]
PYRD_KLEP72.431e-1338.14Dihydroorotate dehydrogenase OS=Klebsiella pneumon... [more]
PYRD_CHLSY2.431e-1336.52Dihydroorotate dehydrogenase OS=Chloroflexus auran... [more]
PYRD_CHLAA2.431e-1336.52Dihydroorotate dehydrogenase OS=Chloroflexus auran... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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