CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PHOLL (Dihydroorotate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  IA   +   +DG I +NTT+ +   V      ++               +++++    R KIP+IG GGI S   A  KI AGA+L+Q+++ F Y GP LI  I
Sbjct:  216 VKIAPDLSEEELIQIADSLIRHNIDGAIATNTTLDKR-LVEGLNYCQQAGGLSGRPVQLRSTEVIRQLSQELRDKIPIIGVGGIDSLTAAREKIAAGASLIQIFSGFIYHGPKLIKDI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ERWCT (Dihydroorotate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  IA   V   +DG+I +NTT+ R      N    +T              I++ +     G++P+IG GGI S   A  K+ AGA+LVQ+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLSEEELIQIADSLVRYNIDGVIATNTTLDRKLIQGLNHCG-QTGGLSGRPLQTSSTEIIRRLSQELAGRLPIIGVGGIDSLVAAREKMDAGASLVQIYSGFIFHGPRLIKDI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_YERE8 (Dihydroorotate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL++E+L  IA   V   +DG+I +NTT+ R   +      ++               +++ +    +G++P+IG GGI S   A  K+ AGA+L+Q+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLTEEELIQIADSLVRHNIDGVIATNTTLDR-SLIQGLNYCEQAGGLSGRPLQLRSTEVIRRLSQELQGRLPIIGVGGIDSVTAAREKMAAGASLIQIYSGFIFRGPGLIKNI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PSEA6 (Dihydroorotate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KIAPDL   +L+ +    + + +DG+I +NTT+ R D V     A+E               I+  +     G +P+IG GGI S   A  +I AG+ L+Q+Y+A  Y GP LI +I
Sbjct:  215 IKIAPDLEDSELDSMVDSFLTVGIDGVIATNTTLDR-DRVKGQEHAEEAGGLSGSVLTDKSQQIVSSLCTKLAGNVPVIGVGGIDSPHAAKARIEAGSPLIQVYSALIYQGPKLIKEI 331          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PECCP (Dihydroorotate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDLS+E+L  IA   V   +DG+I +NTT+ R      N    +T              I++ +     G++P+IG GGI S   A  K+ AGA+LVQ+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLSEEELIQIADSLVRHNIDGVIATNTTLDRKLIQGLNHCG-QTGGLSGRPLQTSSTEIIRRLSQELAGRLPIIGVGGIDSLVAAREKMAAGASLVQIYSGFIFHGPRLIKDI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PSYCK (Dihydroorotate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 345
            +K+APDL    ++ I+   +   +DGLI +NTT+SR   V + P   +               IL++      GK+ LIG GGI SG  A +KI AGA +VQLY+   Y GP L+
Sbjct:  215 LKVAPDLDPIQVDYISQQLLDFEIDGLIATNTTLSRVG-VEDLPDGDQAGGLSGRPVSHISTQILQQFSDQLDGKVALIGVGGIDSGAKAVKKIEAGADMVQLYSGLIYKGPGLV 328          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PSYA2 (Dihydroorotate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 345
            +K+APDL    ++ I+   +   +DGLI +NTT+SR   V + P   +               IL++      GK+ LIG GGI SG  A +KI AGA +VQLY+   Y GP L+
Sbjct:  215 LKVAPDLDPLQVDYISQQLLDFEIDGLIATNTTLSRVG-VEDLPDGDQAGGLSGRPVSHISTQILQQFSDQLDGKVALIGVGGIDSGAKAVKKIEAGADMVQLYSGLIYKGPGLV 328          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AZOVD (Dihydroorotate dehydrogenase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELA 369
            +KIAPD+S E+   +A   +   +D +I +NTT+ R + V     A E              + ++ +     G++P++  GGI+ G  A  KI AGA+LVQ+YT F Y GPALI +    +A
Sbjct:  215 IKIAPDMSDEETAQVARALLDTGMDAVIATNTTLGR-EGVEGLAHAGEAGGLSGAPVREKSTHAVRVLAGELGGRLPIVAVGGITEGRHAAEKIAAGASLVQIYTGFVYKGPALIREAVEAIA 336          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_YERPY (Dihydroorotate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL++E+L  IA   V   +DG+I +NTT+ R   +      ++               ++  +    +G++P+IG GGI S   A  K+ AGA+L+Q+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLTEEELIQIADSLVRHNIDGVIATNTTLDR-SLIQGLNYCEQAGGLSGRPLQLRSTEVIHRLSQELKGRLPIIGVGGIDSVTAAREKMAAGASLIQIYSGFIFRGPGLIKNI 332          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_YERPS (Dihydroorotate dehydrogenase OS=Yersinia pseudotuberculosis GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            VKIAPDL++E+L  IA   V   +DG+I +NTT+ R   +      ++               ++  +    +G++P+IG GGI S   A  K+ AGA+L+Q+Y+ F + GP LI  I
Sbjct:  216 VKIAPDLTEEELIQIADSLVRHNIDGVIATNTTLDR-SLIQGLNYCEQAGGLSGRPLQLRSTEVIHRLSQELKGRLPIIGVGGIDSVTAAREKMAAGASLIQIYSGFIFRGPGLIKNI 332          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_PHOLL3.174e-1337.29Dihydroorotate dehydrogenase OS=Photorhabdus lumin... [more]
PYRD_ERWCT3.174e-1338.98Dihydroorotate dehydrogenase OS=Erwinia carotovora... [more]
PYRD_YERE84.146e-1334.75Dihydroorotate dehydrogenase OS=Yersinia enterocol... [more]
PYRD_PSEA64.146e-1334.75Dihydroorotate dehydrogenase OS=Pseudoalteromonas ... [more]
PYRD_PECCP4.146e-1338.98Dihydroorotate dehydrogenase OS=Pectobacterium car... [more]
PYRD_PSYCK5.415e-1337.39Dihydroorotate dehydrogenase OS=Psychrobacter cryo... [more]
PYRD_PSYA25.415e-1337.39Dihydroorotate dehydrogenase OS=Psychrobacter arct... [more]
PYRD_AZOVD5.415e-1334.15Dihydroorotate dehydrogenase OS=Azotobacter vinela... [more]
PYRD_YERPY7.072e-1334.75Dihydroorotate dehydrogenase OS=Yersinia pseudotub... [more]
PYRD_YERPS7.072e-1334.75Dihydroorotate dehydrogenase OS=Yersinia pseudotub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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