CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_LEGPL (Dihydroorotate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VK++PD + E L+ +  + +   ++G+I +NTT SR + V N P ++E                L+ +       + LIG GGI S E A  KI AGA+L+Q+Y+   Y GP LI  I + L
Sbjct:  210 VKVSPDETDETLKQMTDIILQYGIEGIIATNTTCSR-EMVKNLPCSEEQGGLSGRPLMELSTRCLRLLKQYVGNDVTLIGVGGIDSLESAKDKINAGASLLQVYSGLVYKGPELIHDIVSGL 330          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_LEGPH (Dihydroorotate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=pyrD PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VK++PD + E L+ +  + +   ++G+I +NTT SR + V N P ++E                L+ +       + LIG GGI S E A  KI AGA+L+Q+Y+   Y GP LI  I + L
Sbjct:  210 VKVSPDETDETLKQMTDIILQYGIEGIIATNTTCSR-EMVKNLPCSEEQGGLSGRPLMELSTRCLRLLKQYVGNDVTLIGVGGIDSLESAKDKINAGASLLQVYSGLVYKGPELIHDIVSGL 330          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_LEGPC (Dihydroorotate dehydrogenase OS=Legionella pneumophila (strain Corby) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VK++PD + E L+ +  + +   ++G+I +NTT SR + V N P ++E                L+ +       + LIG GGI S E A  KI AGA+L+Q+Y+   Y GP LI  I + L
Sbjct:  210 VKVSPDETDETLKQMTDIILQYGIEGIIATNTTCSR-EMVKNLPCSEEQGGLSGRPLMELSTRCLRLLKQYVGNDVTLIGVGGIDSLESAKDKINAGASLLQVYSGLVYKGPELIHDIVSGL 330          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_LEGPA (Dihydroorotate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            VK++PD + E L+ +  + +   ++G+I +NTT SR + V N P ++E                L+ +       + LIG GGI S E A  KI AGA+L+Q+Y+   Y GP LI  I + L
Sbjct:  210 VKVSPDETDETLKQMTDIILQYGIEGIIATNTTCSR-EMVKNLPCSEEQGGLSGRPLMELSTRCLRLLKQYVGNDVTLIGVGGIDSLESAKDKINAGASLLQVYSGLVYKGPELIHDIVSGL 330          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_VIBSL (Dihydroorotate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=pyrD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 39/122 (31.97%), Postives = 62/122 (50.82%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAEL 366
            +KIAPDLS +++  I    +  ++DG+I +NTT+ R   V       E               ++++++      +P+IG GG+ S   A  K+ AGA LVQ+Y+ F Y GP L+  I   L
Sbjct:  216 LKIAPDLSDDEISQICESLIKNKIDGVIATNTTLDR-SIVEGMKHCDEAGGLSGRPVQSRSTEVVRKLHEELGDALPIIGVGGVDSYVAAKEKMMAGAKLVQVYSGFIYKGPGLVGDIVKNL 336          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AZOSB (Dihydroorotate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=pyrD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALI 345
            +KIAPDL    + +IA      R+D +I +NTTISR D V     A++               ++ ++     G++P+I  GG+     A  K+ AGA+LVQLY+   Y GP L+
Sbjct:  213 LKIAPDLEAAQITNIADALRRHRIDAVIATNTTISR-DKVQGVRFAEQQGGLSGAPVFEASTAVVAQLATALGGELPIIAAGGVMDTRSARAKLEAGASLVQLYSGLIYRGPCLV 326          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AGRAE (Dihydroorotate dehydrogenase, mitochondrial OS=Agrocybe aegerita GN=URA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGA 294
            +KIAPDL+ E+L+DIAA A   +LDG+IISNTT+SR   + +     ET              +L  M       +PLIG GG+ S E A  K++AGA
Sbjct:  214 LKIAPDLANEELDDIAAEATEQKLDGIIISNTTLSRAG-LKSAGGRDETGGLSGAPLFDRSTIVLARMRERVGPDMPLIGVGGVDSAETALTKVKAGA 310          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_WIGBR (Dihydroorotate dehydrogenase OS=Wigglesworthia glossinidia brevipalpis GN=pyrD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 36/118 (30.51%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQI 354
            +KI+PD++  ++  I+   ++  +DG+I +NTT+++ D +       E               I+K++    +GKIP+IG GGI S + A  KI+AGA+L+Q+Y+   + G  +I ++
Sbjct:  217 IKISPDINNSEIIQISDCLLSYNIDGVIATNTTVNK-DIIMRCCNNCEKGGLSGAPLNENSTRIIKKLSKELKGKIPIIGSGGIISVKSAKEKIKAGASLIQIYSGLVFFGLKIIKKL 333          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_LEGPL1.021e-1134.43Dihydroorotate dehydrogenase OS=Legionella pneumop... [more]
PYRD_LEGPH1.021e-1134.43Dihydroorotate dehydrogenase OS=Legionella pneumop... [more]
PYRD_LEGPC1.021e-1134.43Dihydroorotate dehydrogenase OS=Legionella pneumop... [more]
PYRD_LEGPA1.021e-1134.43Dihydroorotate dehydrogenase OS=Legionella pneumop... [more]
PYRD_VIBSL2.275e-1131.97Dihydroorotate dehydrogenase OS=Vibrio splendidus ... [more]
PYRD_AZOSB2.275e-1133.91Dihydroorotate dehydrogenase OS=Azoarcus sp. (stra... [more]
PYRD_AGRAE2.971e-1141.84Dihydroorotate dehydrogenase, mitochondrial OS=Agr... [more]
PYRD_WIGBR6.619e-1130.51Dihydroorotate dehydrogenase OS=Wigglesworthia glo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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