CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD2_KLUMA (Dihydroorotate dehydrogenase, mitochondrial OS=Kluyveromyces marxianus GN=URA9 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPV--SNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGK-IPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDL +E+++ IA  A   ++DG+I+SNTTI RP  +   +  +  +                LK M   T+G  + L+GCGGISSG DA    +AGAT+V+LYT +AY GP LI ++K E+ E LKR+  K+  + +G D +
Sbjct:  302 VKVAPDLEEEEIKAIAEAAKKSKVDGIIVSNTTIQRPASLITEDKNLVAQAGGLSGKPLKPLSLKALKTMAHYTKGSGLVLVGCGGISSGADAIEFAKAGATMVELYTCYAYRGPGLIARVKDEITEQLKREN-KTWSQIIGEDVK 446          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_THEFY (Dihydroorotate dehydrogenase OS=Thermobifida fusca (strain YX) GN=pyrD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNP---VAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDL+ ED++ +A +AV L LDG+I +NTT+SR D ++ +P    A                 +L+ +      ++ LI  GGI + EDA+ +IRAGATLVQ YT   YGGP    +I   +A   +RDGF SI EAVG D
Sbjct:  223 VKIAPDLADEDIDAVADLAVELGLDGIIATNTTVSR-DGLATDPEEVAALGAGGLSGAPLKERALQVLRRLRARVGDRLVLIAVGGIETPEDAWARIRAGATLVQGYTGLIYGGPLWPRRIHRGVAALARRDGFASIAEAVGVD 365          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_HALSA (Dihydroorotate dehydrogenase OS=Halobacterium salinarium GN=pyrD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 54/141 (38.30%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VK++PDL ++ + D   +A  L LDG++ +NTT  RP+ +S+    ++               +    ++  R   P++G GG+++ EDAY KIRAGA++VQLYTA  Y GP +  +I   L   L+RDGF S+ +AVGAD
Sbjct:  211 VKLSPDLHQDAVADAVELANDLGLDGIVATNTTTERPESLSHPHAGEQGGLSGAPIRERATEQV---RFVAERTDQPVVGVGGVATAEDAYEKIRAGASVVQLYTALVYEGPWVAKRINEGLVSLLERDGFDSVEDAVGAD 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_HALS3 (Dihydroorotate dehydrogenase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 54/141 (38.30%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VK++PDL ++ + D   +A  L LDG++ +NTT  RP+ +S+    ++               +    ++  R   P++G GG+++ EDAY KIRAGA++VQLYTA  Y GP +  +I   L   L+RDGF S+ +AVGAD
Sbjct:  211 VKLSPDLHQDAVADAVELANDLGLDGIVATNTTTERPESLSHPHAGEQGGLSGAPIRERATEQV---RFVAERTDQPVVGVGGVATAEDAYEKIRAGASVVQLYTALVYEGPWVAKRINEGLVSLLERDGFDSVEDAVGAD 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_TRIEI (Dihydroorotate dehydrogenase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 56/145 (38.62%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPD------PVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVG 417
            VKIAPDL  E +  I  +    ++ G+I +NTTI+R        P +  P+ +E               I+K ++  T+GK+P+IG GGI + EDA+ KI AGA+L+Q+YT   Y GP ++ QI   L + L   G  SI EAVG
Sbjct:  230 VKIAPDLENEAIAAIIDLIKEYKISGIIATNTTINREKLTTKILPATGKPIIEEAGGISGKPLTKRSTEIIKFIWQETKGKLPIIGVGGIFTSEDAWNKITAGASLIQIYTGLVYQGPGIVKQILQGLLKKLDEHGLNSISEAVG 374          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_DEIDV (Dihydroorotate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pyrD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VK+APDL   D E     A+   + GLI+SNTT+SR      +   ++               ++++ Y LTRG +P++G GGI S +DAY KIRAGA+LV++Y++  Y GP L  +I   L + L+RDG   + +AVGAD
Sbjct:  221 VKLAPDLHPADFEASVQGALNAGVQGLIVSNTTLSRDGLTHAH--REQAGGLSGRPLTGRSTALVQDAYRLTRGAVPVVGVGGIFSADDAYAKIRAGASLVEVYSSLIYEGPGLPARIHRGLGQLLERDGISHVRDAVGAD 359          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AGRRK (Dihydroorotate dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=pyrD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL++E ++DIAA  +A  LDGLI+SNTT+SR D + +   AKE               +L +M       +P+IG GG+SS E A  KIRAGA LVQLY+   Y GP L  ++ A L++ L R+   SI E
Sbjct:  214 LKIAPDLTEEGMDDIAAEVLAHALDGLIVSNTTLSR-DGLKDQVQAKEAGGLSGKPVFERSTVVLAKMRRRVGAALPIIGVGGVSSAETALEKIRAGADLVQLYSCMVYEGPGLPGRVVAGLSKLLDRERVASIRE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ROSS1 (Dihydroorotate dehydrogenase OS=Roseiflexus sp. (strain RS-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVG 417
            +K++PD + + LE +        +   I +NTT++R D  S   +A ET              ++  +Y LT G  P+IG GGI++ EDAY+ IRAGA L+Q+YT   Y GPA+   IK  LA  L+RDGF S+ EAVG
Sbjct:  220 LKVSPDETPDQLEAVVRAGCDAGIAAFIATNTTLARDDLHSR--LAIETGGLSGRPLTQRARQVIGAIYRLTHGAPPVIGVGGIATAEDAYQHIRAGARLIQIYTGMVYAGPAIARDIKQGLARRLRRDGFTSLEEAVG 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHIL3 (Dihydroorotate dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=pyrD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL++E ++DIAA A++  LDGLI+SNTT+SR D + +   AKET              +L  M       +P+IG GG+SS E A  KIRAGA LVQLY+   Y GP L   +   L++ L R+   SI E
Sbjct:  214 LKIAPDLTEEGMDDIAAEALSHALDGLIVSNTTLSR-DGLKDQRQAKETGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAETALEKIRAGADLVQLYSCMVYEGPGLAGDVVRGLSKLLDREKAASIRE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUSU (Dihydroorotate dehydrogenase OS=Brucella suis GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD2_KLUMA6.381e-2240.41Dihydroorotate dehydrogenase, mitochondrial OS=Klu... [more]
PYRD_THEFY8.334e-2243.06Dihydroorotate dehydrogenase OS=Thermobifida fusca... [more]
PYRD_HALSA1.088e-2138.30Dihydroorotate dehydrogenase OS=Halobacterium sali... [more]
PYRD_HALS31.088e-2138.30Dihydroorotate dehydrogenase OS=Halobacterium sali... [more]
PYRD_TRIEI1.857e-2138.62Dihydroorotate dehydrogenase OS=Trichodesmium eryt... [more]
PYRD_DEIDV1.857e-2139.72Dihydroorotate dehydrogenase OS=Deinococcus desert... [more]
PYRD_AGRRK1.857e-2144.12Dihydroorotate dehydrogenase OS=Agrobacterium radi... [more]
PYRD_ROSS12.425e-2140.29Dihydroorotate dehydrogenase OS=Roseiflexus sp. (s... [more]
PYRD_RHIL32.425e-2144.12Dihydroorotate dehydrogenase OS=Rhizobium legumino... [more]
PYRD_BRUSU3.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella suis GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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