CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUSI (Dihydroorotate dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUO2 (Dihydroorotate dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUC2 (Dihydroorotate dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUAB (Dihydroorotate dehydrogenase OS=Brucella abortus GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUA2 (Dihydroorotate dehydrogenase OS=Brucella abortus (strain 2308) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BRUA1 (Dihydroorotate dehydrogenase OS=Brucella abortus (strain S19) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL+ E+L+DIAA A A +LDG+I+SNTT+SR   + N   + ET              +L  M       +PLIG GGI S E A  KI+AGA LVQLYT   Y GP L  +I   L+  +K +G  SI E
Sbjct:  214 LKIAPDLTDEELDDIAAEADAQKLDGIIVSNTTLSRSG-LKNPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLVQLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SULDN (Dihydroorotate dehydrogenase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KIAPD+SKED   +  +AV    DG+I +NTT+          +   +              + KE+Y    GK  LI  GGISS ++ YR+I+AGA+LVQ+Y+   Y GP LI  I  EL E +K DG+ +I +A+GAD
Sbjct:  214 LKIAPDMSKEDAVALTKLAVLKGADGIIATNTTVDYSLVKEPKSIGGLSGAVLKEKSFEIFEAVAKELY----GKTTLISVGGISSAKEVYRRIKAGASLVQIYSGLIYEGPDLIKNINNELTELIKADGYTNITQAIGAD 350          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AGRVS (Dihydroorotate dehydrogenase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIE 408
            +KIAPDL++E ++DIA V +A  LDGLI+SNTT+SR D +++   A E               +L  M       +P+IG GG+SS + A  KI+AGA LVQLY+   Y GP L   I   L++ L RDG  SI +
Sbjct:  215 LKIAPDLTEEGMDDIAEVVLARDLDGLIVSNTTLSR-DGLTDTRQAGEAGGLSGKPLFEKSTAVLARMRHRVGSALPIIGVGGVSSAQTALEKIKAGADLVQLYSCMVYEGPGLPAAIVKGLSQALDRDGIASIAQ 349          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_STRAW (Dihydroorotate dehydrogenase OS=Streptomyces avermitilis GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.402e-21
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDP--VSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D++ +A +AV L LDG+I +NTTI+R      S   + KET              +L  +Y     +I L+G GGI + EDA+++I AGATLVQ Y+AF Y GP     I   LA  L+   + ++ +AVGAD R
Sbjct:  221 VKIAPDLADDDIDAVADLAVELGLDGIIATNTTIAREGLGLKSEPTLVKETGGLSGAPLKARSLEVLSRLYARVGDRITLVGVGGIENAEDAWQRILAGATLVQGYSAFIYEGPFWGRAIHKGLAARLRTSPYATLADAVGADVR 365          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHILW (Dihydroorotate dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=pyrD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.402e-21
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRD 387
            +KIAPDL++E ++DIAA A+A  LDGLI+SNTT+SR D + +   AKET              +L  M       +P+IG GG+SS E A  KIRAGA LVQLY+   Y GP L   I   L++ + R+
Sbjct:  214 LKIAPDLTEEGMDDIAAEALAHALDGLIVSNTTLSR-DGLKDQRQAKETGGLSGVPLFEKSTAVLARMRKRVGAALPIIGVGGVSSAETALEKIRAGADLVQLYSCMVYEGPGLPGDIVRGLSKLMDRE 341          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_BRUSI3.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella suis (str... [more]
PYRD_BRUO23.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella ovis (str... [more]
PYRD_BRUC23.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella canis (st... [more]
PYRD_BRUAB3.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella abortus G... [more]
PYRD_BRUA23.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella abortus (... [more]
PYRD_BRUA13.167e-2144.85Dihydroorotate dehydrogenase OS=Brucella abortus (... [more]
PYRD_SULDN4.136e-2139.72Dihydroorotate dehydrogenase OS=Sulfurimonas denit... [more]
PYRD_AGRVS4.136e-2142.65Dihydroorotate dehydrogenase OS=Agrobacterium viti... [more]
PYRD_STRAW5.402e-2141.38Dihydroorotate dehydrogenase OS=Streptomyces averm... [more]
PYRD_RHILW5.402e-2144.96Dihydroorotate dehydrogenase OS=Rhizobium legumino... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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