CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_STRGG (Dihydroorotate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=pyrD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 58/145 (40.00%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDP--VSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ ED++ +A +AV L LDG+I +NTT++R      S+  +  E               +L  +Y     +I L+G GG+ + EDA+++I AGATLVQ Y+AF Y GPA    I   LA  L    + ++ EAVGA+ R
Sbjct:  221 VKIAPDLADEDVDAVADLAVELGLDGVIATNTTVAREGLGLKSHPDLVGEAGGLSGAPLKDRSLEVLSRLYARVGDRITLVGVGGVENAEDAWQRILAGATLVQGYSAFIYEGPAYARAIHQGLAARLAASPYATLAEAVGAETR 365          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHIEC (Dihydroorotate dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=pyrD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 60/134 (44.78%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSI 402
            +KIAPDL++E ++DIAA A+A  LDGLI+SNTT+SR D + +   AKE               +L  M       +P+IG GG+SS E A  KIRAGA LVQLY+   Y GP L   I   L+  L R+   SI
Sbjct:  214 LKIAPDLTEEGMDDIAAEALAHPLDGLIVSNTTLSR-DGLKDQRQAKEAGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAETALEKIRAGADLVQLYSCMVYEGPGLPGTIVRGLSALLDREKAGSI 346          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_CORGL (Dihydroorotate dehydrogenase OS=Corynebacterium glutamicum GN=pyrD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRP--DPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VKIAPDLS ED++ +A +AV L+L G++ +NTTISR   +  S    A                 +LK +Y     ++ LI  GGIS+ E A+ +I +GATL+Q YT F YGGP  I  I   +A+ LK  G ++I +AVG++
Sbjct:  224 VKIAPDLSDEDIDAVADLAVELKLAGIVATNTTISREGLNTPSGEVEAMGAGGISGAPVAARSLEVLKRLYARVGKEMVLISVGGISTPEQAWERITSGATLLQGYTPFIYGGPDWIRDIHLGIAKQLKAHGLRNIADAVGSE 366          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_COREF (Dihydroorotate dehydrogenase OS=Corynebacterium efficiens GN=pyrD PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXN--NILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGA 420
            VKIAPDLS ED++ +A +AV L L G++ +NTTISR   V+      E                 +L+ ++     ++ LIG GGIS+ E A+ +I AGATL+Q YT F YGGP  I  I   LAE +K  G  +I EAVG+
Sbjct:  227 VKIAPDLSDEDVDAVADLAVELGLAGIVATNTTISREGLVTPAHEVAEMGAGGISGPPVAERALEVLRRLHARVGDQLVLIGVGGISTPEQAWERIAAGATLLQGYTGFIYGGPDWIRDIHLGLAEQVKAHGLSNISEAVGS 368          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIF5 (Dihydroorotate dehydrogenase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=pyrD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAV--ALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGA 420
            +KIAPDL  +DL  I ++A+  A  ++G I +NTTI RP   ++ P   E+            N ++ ++Y  T+G++P+IG GGI S  DAY KI AGA+LVQ+Y+   + GP L+ +I  EL     +DG+  +  A G+
Sbjct:  223 LKIAPDLDNDDLNAIGSLALGTAPLVNGFIATNTTIERP---ASQPGLSESGGLSGAPLLQQSNAVIAQLYRATQGQVPIIGVGGILSAADAYAKILAGASLVQVYSGLIFRGPGLVREILEELPGLWLKDGYPDLAHARGS 361          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ACIF2 (Dihydroorotate dehydrogenase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=pyrD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAV--ALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGA 420
            +KIAPDL  +DL  I ++A+  A  ++G I +NTTI RP   ++ P   E+            N ++ ++Y  T+G++P+IG GGI S  DAY KI AGA+LVQ+Y+   + GP L+ +I  EL     +DG+  +  A G+
Sbjct:  223 LKIAPDLDNDDLNAIGSLALGTAPLVNGFIATNTTIERP---ASQPGLSESGGLSGAPLLQQSNAVIAQLYRATQGQVPIIGVGGILSAADAYAKILAGASLVQVYSGLIFRGPGLVREILEELPGLWLKDGYPDLAHARGS 361          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_DELAS (Dihydroorotate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.973e-20
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAE 372
            VKIAPDL +E +  IAA      +DG+I +NTTISR + V   P A+ET            N +++++      + P+IG GGI SGEDA  KIRAGA +VQ+Y+   Y GPAL+P+    +A+
Sbjct:  224 VKIAPDLDEEQVGVIAATLQRHGMDGVIATNTTISR-EAVKGLPYAQETGGLSGAPVLEASNQVIRQLRSALGSRYPIIGVGGILSGEDAVSKIRAGADVVQIYSGLIYRGPALVPETARAIAQ 346          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_SULNB (Dihydroorotate dehydrogenase OS=Sulfurovum sp. (strain NBC37-1) GN=pyrD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            +KIAPD++ ED   +   AV     G+I +NTTI      S  P AK+               + K +     GK  LI  GGI S E+AYR+I+AGA+LVQ+Y+   Y GPALI +I   L + LK+DG+  I EA+GAD++
Sbjct:  216 LKIAPDMTHEDAIALCNTAVDAGAAGIIATNTTID----YSLTPHAKDFGGISGALLTEKSYQLFKAIGKELYGKTLLISVGGIDSAEEAYRRIKAGASLVQVYSMLIYKGPALIREINEGLIKLLKKDGYTHISEAIGADWK 354          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_NITSB (Dihydroorotate dehydrogenase OS=Nitratiruptor sp. (strain SB155-2) GN=pyrD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 56/143 (39.16%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            +KIAPD+S++    + + AV     G+I +NT+I              +              + KE++    GK  LI  GGI S E+AYR+IR GATL+Q+YT+F YGGP L+  I   L E LK+DGF  I EA+G D R
Sbjct:  213 LKIAPDMSEDQAVSLCSTAVDAGAAGVIATNTSIDYSLLRGAKDFGGVSGKVIKEKSFAIFKAVAKELF----GKTVLISVGGIDSAEEAYRRIRHGATLLQIYTSFIYGGPGLVKSINEGLIEYLKKDGFTHISEAIGIDIR 351          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_NATPD (Dihydroorotate dehydrogenase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=pyrD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            VK++PDL+   +ED   V   L LDG+I +NTT  RP  + ++  A E              +I++  ++  R   P++G GGI   E AY KIR GA++VQLYT   Y GP +   I   L + L+RDGF S+ +AVG D
Sbjct:  212 VKLSPDLTDAAIEDAIEVVEDLGLDGIIATNTTTKRPASLHSD-AADEEGGLSGAPITDESTDIVR--FIAKRTDKPIVGVGGIDDAESAYEKIRNGASVVQLYTGLVYEGPTIARDINRGLLKLLERDGFASVEDAVGVD 349          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_STRGG3.502e-2040.00Dihydroorotate dehydrogenase OS=Streptomyces grise... [more]
PYRD_RHIEC3.502e-2044.78Dihydroorotate dehydrogenase OS=Rhizobium etli (st... [more]
PYRD_CORGL3.502e-2040.56Dihydroorotate dehydrogenase OS=Corynebacterium gl... [more]
PYRD_COREF3.502e-2042.25Dihydroorotate dehydrogenase OS=Corynebacterium ef... [more]
PYRD_ACIF53.502e-2038.03Dihydroorotate dehydrogenase OS=Acidithiobacillus ... [more]
PYRD_ACIF23.502e-2038.03Dihydroorotate dehydrogenase OS=Acidithiobacillus ... [more]
PYRD_DELAS5.973e-2042.74Dihydroorotate dehydrogenase OS=Delftia acidovoran... [more]
PYRD_SULNB7.801e-2040.56Dihydroorotate dehydrogenase OS=Sulfurovum sp. (st... [more]
PYRD_NITSB7.801e-2039.16Dihydroorotate dehydrogenase OS=Nitratiruptor sp. ... [more]
PYRD_NATPD7.801e-2039.01Dihydroorotate dehydrogenase OS=Natronomonas phara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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