CK739686

Overview
NameCK739686
Unique NameCK739686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4990 contig Csv1_Contig4990:247..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.627e-32
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:  142 KSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 405
            + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   68 QGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155

HSP 2 Score: 46.595 bits (109), Expect = 2.627e-32
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCK 122
            +A  S TIK+MIED   +D+ IPLPNVTS IL KV++YC+
Sbjct:   20 IACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCR 59
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.802e-32
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:  142 KSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 405
            + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   68 QGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155

HSP 2 Score: 45.4394 bits (106), Expect = 5.802e-32
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCK 122
            +A  S TIK+MIED   +D  IPLPNVTS IL KV++YC+
Sbjct:   20 IACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCR 59
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
[Close]
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.556e-32
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  148 DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   74 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

HSP 2 Score: 39.2762 bits (90), Expect = 7.556e-32
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:    6 VALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYC 119
            +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62
The following BLAST results are available for this feature:
BLAST of CK739686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1A_DICDI2.627e-3261.36SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI5.802e-3261.36SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1_XENLA7.556e-3264.04S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT7.556e-3264.04S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB7.556e-3264.04S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE7.556e-3264.04S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA7.556e-3264.04S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN7.556e-3264.04S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK7.556e-3264.04S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO7.556e-3264.04S-phase kinase-associated protein 1 OS=Cavia porce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6073 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739686 ID=CK739686; Name=CK739686; organism=Citrus sinensis; type=EST; length=421bp
AAGCAGTGGCGTTGGAATCGCAGACCATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACCGTCGAGGCATCTAAGTCCGAC
GATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGA
TTTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAA
ACTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCA
GACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAACAT
CAAGAACGACTTTACCCCAGAAGAGGAGGAAGAGGGTCGTCGGGAGAATC
AGTGGGCTTTTGAGTGAAAGG
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