CK739686

Overview
NameCK739686
Unique NameCK739686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.360e-19
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 3
Query:   27 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKK
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKK 35          

HSP 2 Score: 53.9138 bits (128), Expect = 1.360e-19
Identity = 24/39 (61.54%), Postives = 35/39 (89.74%), Query Frame = 1
Query:  172 DDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLT 285
            ++DLK WD +F+K ++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:   42 EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 6.928e-18
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 309
            D A    D+DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:   65 DAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          

HSP 2 Score: 53.9138 bits (128), Expect = 6.928e-18
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 3
Query:    9 ALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC K
Sbjct:   23 ARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNK 61          
The following BLAST results are available for this feature:
BLAST of CK739686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK6_ARATH1.360e-1987.88SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK7_ARATH6.928e-1854.72SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6073 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739686 ID=CK739686; Name=CK739686; organism=Citrus sinensis; type=EST; length=421bp
AAGCAGTGGCGTTGGAATCGCAGACCATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACCGTCGAGGCATCTAAGTCCGAC
GATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGA
TTTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAA
ACTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCA
GACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAACAT
CAAGAACGACTTTACCCCAGAAGAGGAGGAAGAGGGTCGTCGGGAGAATC
AGTGGGCTTTTGAGTGAAAGG
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