CK739688

Overview
NameCK739688
Unique NameCK739688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1198 contig Csv1_Contig1198:203..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739688 vs. ExPASy Swiss-Prot
Match: RL29_SCHPO (60S ribosomal protein L29 OS=Schizosaccharomyces pombe GN=rpl29 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:   50 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARK 193
            MAKSKNHT HNQ+ KAH+NGIK+P+KHR+ S K  D KF RNQ++A +
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANR 48
The following BLAST results are available for this feature:
BLAST of CK739688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL29_SCHPO2.566e-1264.5860S ribosomal protein L29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6075 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739688 ID=CK739688; Name=CK739688; organism=Citrus sinensis; type=EST; length=435bp
AGAAAAATCTCTAGCACAGCCGCGAGCAGGGTCTTTTCCTGAAAACGAGA
TGGCAAAGTCAAAGAATCACACAGCGCATAACCAGTCTTACAAGGCTCAC
AAGAACGGTATCAAGAAACCTAAGAAGCACCGCCACACTTCCACCAAAGG
GATGGACCCAAAGTTCCTGAGGAACCAGAGGTATGCAAGGAAGCATAACA
AGCAGGGAGGTGAATCTGCTGCTGAGGAGTAGATGCTGTTATGGGGTTTT
AATTACTTAGTTGTTAAGATTTTTTTAACCCCTTGAATGGATATCTGTTT
TGTTTTTGTTATTGTAGTGACTTGATGGCACTGTAGTGGGTTTCATTTCA
ATTTCAAGTATCTGCTGAATCGTTAAGCTATGTTTGGTTACTGATGTGAT
AATTGCTAAAGATTATTAAAATTTGAATTCTATTT
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