CK739692

Overview
NameCK739692
Unique NameCK739692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.290e-55
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.201e-55
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.754e-55
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGG 193
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.363e-55
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGG
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGG 193
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.092e-54
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:   79 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGG 182
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.426e-54
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG
Sbjct:   89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.863e-54
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:   86 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 189
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.433e-54
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGG
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGG 193
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.150e-54
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG
Sbjct:  102 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGG 205
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.150e-54
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG
Sbjct:  102 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGG 205
The following BLAST results are available for this feature:
BLAST of CK739692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB22_TOBAC1.290e-5595.19Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB23_PETSP2.201e-5595.19Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB24_PETSP3.754e-5595.19Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB25_NICPL8.363e-5595.19Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_CUCSA1.092e-5495.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE1.426e-5495.19Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_MAIZE1.863e-5496.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_WHEAT2.433e-5493.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY4.150e-5493.27Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY4.150e-5493.27Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6079 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739692 ID=CK739692; Name=CK739692; organism=Citrus sinensis; type=EST; length=314bp
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTG
AGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTG
TACCCAGGTGGCAG
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